File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/2b69d0550877779d1adcd60c54912c/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-rwc6uhsq because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:23:46,604 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:23:47,400 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:23:47,563 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:23:48,466 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:23:48,633 - cnv_pipe.batch.run_model - INFO - Processing cluster 1673 with 185 probes
2026-06-08 22:23:49,005 - cnv_pipe.batch.run_model.cluster1673 - INFO - Child process started for cluster 1673 with 185 probes
2026-06-08 22:24:43,546 - cnv_pipe.batch.run_model.cluster1673 - INFO - Child process finished cluster 1673. Wrote cluster_1673_samples.csv and cluster_1673_params.csv
2026-06-08 22:24:43,547 - cnv_pipe.batch.run_model - INFO - Cluster 1673 finished in 54.91 seconds. Status: SUCCESS