cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_tumor.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119835997, elapsed 0.1s, est remaining 1.0s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 1039
progress 10% @chr2:19946461, elapsed 0.1s, est remaining 0.8s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 3996
progress 15% @chr2:189008035, elapsed 0.1s, est remaining 0.8s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 14393
progress 20% @chr3:97871842, elapsed 0.2s, est remaining 0.7s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 9490
progress 25% @chr4:88437711, elapsed 0.2s, est remaining 0.7s, peak mem 166MB, user 0.0s, sys 0.0s, output queue size 19745
progress 30% @chr5:147399082, elapsed 0.3s, est remaining 0.7s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 9368
progress 35% @chr6:127119291, elapsed 0.3s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 19352
progress 40% @chr7:128806237, elapsed 0.4s, est remaining 0.6s, peak mem 172MB, user 0.0s, sys 0.0s, output queue size 9274
progress 45% @chr9:990041, elapsed 0.4s, est remaining 0.5s, peak mem 337MB, user 0.0s, sys 0.0s, output queue size 18645
progress 50% @chr10:32016829, elapsed 0.5s, est remaining 0.5s, peak mem 343MB, user 0.0s, sys 0.1s, output queue size 4415
progress 55% @chr11:48263861, elapsed 0.5s, est remaining 0.4s, peak mem 343MB, user 0.0s, sys 0.1s, output queue size 14858
progress 60% @chr12:8773321, elapsed 0.6s, est remaining 0.4s, peak mem 352MB, user 0.0s, sys 0.1s, output queue size 5826
progress 65% @chr13:49136332, elapsed 0.6s, est remaining 0.3s, peak mem 352MB, user 0.0s, sys 0.1s, output queue size 16869
progress 70% @chr15:42669158, elapsed 0.7s, est remaining 0.3s, peak mem 361MB, user 0.0s, sys 0.1s, output queue size 6478
progress 75% @chr16:30947052, elapsed 0.7s, est remaining 0.2s, peak mem 361MB, user 0.0s, sys 0.1s, output queue size 5423
progress 80% @chr17:42553439, elapsed 0.7s, est remaining 0.2s, peak mem 361MB, user 0.0s, sys 0.1s, output queue size 16115
progress 85% @chr19:5661518, elapsed 0.8s, est remaining 0.1s, peak mem 406MB, user 0.0s, sys 0.1s, output queue size 3822
progress 90% @chr19:55712420, elapsed 0.8s, est remaining 0.1s, peak mem 406MB, user 0.0s, sys 0.1s, output queue size 13327
progress 95% @chr22:36467804, elapsed 1.2s, est remaining 0.1s, peak mem 2488MB, user 6.2s, sys 1.9s, output queue size 702
progress 100% @chrY:21540598, elapsed 1.2s, est remaining 0.0s, peak mem 2488MB, user 6.2s, sys 1.9s, output queue size 4498
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 50813899
reads: 1001320
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.975 user 0.058 sys 2.108 real
done: 1 calls 0.216 user 0.157 sys 0.379 real
execute: 1 calls 0.003 user 0.010 sys 1.219 real
fetch_reads: 208647 calls 0.072 user 0.001 sys 0.138 real
fetch_ref: 2048 calls 0.012 user 0.004 sys 0.022 real
fetch_vcf: 2048 calls 0.726 user 0.032 sys 0.919 real
idle: 92 calls 0.002 user 0.001 sys 31.660 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2195 calls 3.883 user 1.747 sys 6.580 real
overall: 2609319936 mem 9.377 user 8.060 sys 2.593 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory