cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr8_93795409-93795507.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr8_93795409-93795507.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr8:144260677, elapsed 0.0s, est remaining 0.8s, peak mem 75MB, user 0.0s, sys 0.1s, output queue size 2218
progress 10% @chr9:37369368, elapsed 0.1s, est remaining 0.7s, peak mem 75MB, user 0.0s, sys 0.3s, output queue size 1281
progress 15% @chr9:96817923, elapsed 0.1s, est remaining 0.6s, peak mem 84MB, user 0.0s, sys 0.4s, output queue size 3042
progress 20% @chr9:128941668, elapsed 0.2s, est remaining 0.6s, peak mem 96MB, user 0.1s, sys 0.5s, output queue size 5656
progress 25% @chr10:14945105, elapsed 0.2s, est remaining 0.6s, peak mem 111MB, user 0.1s, sys 0.7s, output queue size 8419
progress 30% @chr10:69207793, elapsed 0.2s, est remaining 0.6s, peak mem 117MB, user 0.2s, sys 0.9s, output queue size 10799
progress 35% @chr10:100506040, elapsed 0.3s, est remaining 0.5s, peak mem 129MB, user 0.2s, sys 1.0s, output queue size 13451
progress 40% @chr11:372852, elapsed 0.3s, est remaining 0.5s, peak mem 138MB, user 0.2s, sys 1.2s, output queue size 16039
progress 45% @chr11:17959470, elapsed 0.4s, est remaining 0.5s, peak mem 147MB, user 0.3s, sys 1.4s, output queue size 18189
progress 50% @chr11:61419922, elapsed 0.4s, est remaining 0.4s, peak mem 165MB, user 0.3s, sys 1.6s, output queue size 20553
progress 55% @chr11:73234160, elapsed 0.5s, est remaining 0.4s, peak mem 171MB, user 0.3s, sys 1.8s, output queue size 23227
progress 60% @chr11:114570938, elapsed 0.5s, est remaining 0.3s, peak mem 174MB, user 0.3s, sys 2.0s, output queue size 25523
progress 65% @chr12:6466225, elapsed 0.5s, est remaining 0.3s, peak mem 195MB, user 0.4s, sys 2.2s, output queue size 27880
progress 70% @chr12:31689007, elapsed 0.6s, est remaining 0.3s, peak mem 201MB, user 0.4s, sys 2.3s, output queue size 29967
progress 75% @chr12:55971044, elapsed 0.6s, est remaining 0.2s, peak mem 204MB, user 0.5s, sys 2.5s, output queue size 32445
progress 80% @chr12:100050168, elapsed 0.7s, est remaining 0.2s, peak mem 216MB, user 0.5s, sys 2.6s, output queue size 35173
progress 85% @chr12:123785746, elapsed 0.7s, est remaining 0.1s, peak mem 231MB, user 0.5s, sys 2.9s, output queue size 38028
progress 90% @chr13:48459668, elapsed 0.8s, est remaining 0.1s, peak mem 243MB, user 0.5s, sys 3.1s, output queue size 40395
progress 95% @chr14:22767958, elapsed 0.8s, est remaining 0.0s, peak mem 246MB, user 0.5s, sys 3.2s, output queue size 42653
progress 100% @chr14:63016831, elapsed 0.9s, est remaining 0.0s, peak mem 252MB, user 0.6s, sys 3.3s, output queue size 45205
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 384
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71692760
output file size: 22308
reads: 1001089
contig: 48642 intervals 9000010 bases
active: 98785 calls 0.000 user 0.000 sys 0.017 real
advance: 50143 calls 0.003 user 0.023 sys 0.018 real
calc: 98785 calls 0.009 user 0.013 sys 0.016 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.002 user 0.001 sys 3.334 real
fetch: 98785 calls 0.012 user 0.006 sys 0.017 real
fetch_ref: 98785 calls 0.099 user 0.027 sys 0.358 real
idle: 63 calls 0.004 user 0.008 sys 41.950 real
init: 1 calls 0.030 user 0.010 sys 0.042 real
region: 98785 calls 0.000 user 0.000 sys 0.021 real
tracker: 98785 calls 0.010 user 0.000 sys 0.089 real
overall: 267526144 mem 1.336 user 5.520 sys 4.463 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory