File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/abfc395b2595be33c79779cfff7e4a/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXd8Q1Z9/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXd8Q1Z9/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXd8Q1Z9/chr19_15162349-15162662.bed.gz.tbi
[2026-06-08T22:17:14.796583Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:14.797165Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:14.797175Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:14.797180Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:14.797184Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXd8Q1Z9'
[2026-06-08T22:17:14.797188Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:14.797194Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:14.797197Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:14.797202Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] [RunParameters] memMb: 773429
[2026-06-08T22:17:14.797206Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:14.797210Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:14.797213Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:14.797217Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:14.797221Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:14.797945Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:14.798040Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:14.803961Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:14.804660Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:14.805170Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:14.805410Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:14.805892Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.806278Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.806375Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.806448Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.806568Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.806635Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.806759Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.806825Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.807157Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.807427Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.807511Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.807730Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.807800Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.807947Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.808094Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.808529Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.808790Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.809014Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.809261Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.809452Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.809658Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.809890Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.811389Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.811941Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:14.812326Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.812458Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.812649Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.813031Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.813438Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.813527Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.813643Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.813714Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.813832Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.813894Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.814007Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.814069Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.814181Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.814246Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.814407Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.814798Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.815071Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.815477Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.815846Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.815910Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.816512Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.816576Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.816691Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.816821Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.817048Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.817505Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.817617Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.817680Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.817789Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.817852Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.817965Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.818028Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.818143Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.818209Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.818318Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.818379Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.818521Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.818650Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.819296Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.819361Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.819463Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.819529Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.833463Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.833926Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.833993Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.834154Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.834224Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.834309Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.834374Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.834480Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.835741Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:14.835958Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:14.838330Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.839199Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.839550Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.839939Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.841681Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.842081Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:17:14.845855Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.846047Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:17:14.846134Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:17:14.846487Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.846727Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:17:14.846964Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.847290Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.851376Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:17:14.852708Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:17:14.854045Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:17:14.855124Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:17:14.913284Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.913406Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.914107Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.914874Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:14.918495Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:17:14.919720Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:17:15.029625Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.030426Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.033140Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:17:15.246088Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.246846Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.249733Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:17:15.278893Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.279641Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.282306Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:17:15.595463Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.596217Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.598886Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:17:15.628369Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.629127Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.631518Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:17:15.662378Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.663112Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.665808Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:17:16.128273Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.128360Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.129080Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.129584Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.132336Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:17:16.133260Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:17:16.162676Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.163373Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.166061Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:17:16.528402Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.529537Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.532534Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:17:16.561569Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.561652Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.562290Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.562791Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.565550Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:17:16.566316Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:17:16.595182Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.595870Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.598428Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:17:16.710172Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.710884Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.713674Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:17:16.743015Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.743704Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.746400Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:17:16.775757Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.776430Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.779158Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:17:16.808778Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.809413Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.811961Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:17:17.175465Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.176178Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.179262Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:17:17.290697Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.291404Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.294161Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:17:17.323607Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.324273Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.326945Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:17:17.356360Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.357004Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.359766Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:17:17.389302Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.389942Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.392880Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:17:17.422205Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.422291Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.422890Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.424495Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.425938Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:17:17.426857Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:17:17.457793Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.458413Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.461009Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:17:17.974009Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.974640Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.977258Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:17:18.089947Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.090627Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.093259Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:17:18.122744Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.122827Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.123384Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.125203Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.126032Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:17:18.128457Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:17:18.157808Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.157890Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.158459Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.159030Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.161418Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:17:18.162442Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:17:18.192068Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.192684Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.195332Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:17:18.256757Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.256834Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.257420Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.257760Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.260769Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:17:18.261466Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:17:18.289472Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.290055Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.292601Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:17:18.322061Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.322622Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.325089Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:17:18.354856Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.355416Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.357967Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:17:18.387601Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.388210Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.390685Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:17:18.420126Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.420669Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.423252Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:17:18.736439Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.737032Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.739546Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:17:18.770338Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.770880Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.773531Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:17:18.885202Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.885761Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.888463Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:17:18.917780Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.918350Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.920939Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:17:18.950720Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.951282Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.953925Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:17:19.165693Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.166233Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.168995Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:17:19.198280Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.198367Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.198867Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.199365Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.202251Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:17:19.203213Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:17:19.232950Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.233391Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.235854Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:17:19.249250Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.249678Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.251875Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:17:19.265639Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.281481Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.896760Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.897217Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.899691Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:17:19.930270Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.244715Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.245143Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.247477Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:17:20.277131Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.441205Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.441581Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.443738Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:17:20.474449Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.538306Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.538655Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.540822Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:17:20.570695Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.834793Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.835112Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.837121Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:17:20.867003Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.231493Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.231840Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.233663Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:17:21.263698Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.263908Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.264010Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.264471Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.265023Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.267387Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:21.268387Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:21.269277Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:21.298102Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.298153Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.298173Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.298332Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.299893Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.300156Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:21.302535Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:21.332133Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.332189Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.332356Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.334395Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:21.364323Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.386280Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:33.685492Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:33.685492Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] 
[2026-06-08T22:17:33.685492Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:33.685530Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] 
[2026-06-08T22:17:33.685536Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:33.685542Z] [nf-d8abfc395b2595be33c79779cfff7e4a-7ee04-k5z77] [525_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec