Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/control_truth/na12878/na12878_germline_cnv_dels.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/a16b7625409ce7f78e31535e4547fc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/a16b7625409ce7f78e31535e4547fc/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/b67c3dbc4bef1905d596c737be2356/germline_control_1.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/b67c3dbc4bef1905d596c737be2356/germline_control_1.vcf.gz.tbi
==> STAGING COMPLETE (5 inputs)

[E::bcf_hdr_parse_line] Could not parse the header line: "##ABNORMAL_PLOIDY_CHR=<chr1:0,chr12:0,chr14:0,chr5:0,chr6:0,chr7:0>"
[E::bcf_hdr_parse_line] Could not parse the header line: "##ABNORMAL_PLOIDY_CHR=<chr1:0,chr12:0,chr14:0,chr5:0,chr6:0,chr7:0>"
[E::bcf_hdr_parse_line] Could not parse the header line: "##ABNORMAL_PLOIDY_CHR=<chr1:0,chr12:0,chr14:0,chr5:0,chr6:0,chr7:0>"