cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_tumor --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_1.tnseq.vcf.gz --contamination positive_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_1.tnseq.segments --orientation_priors positive_somatic_control_1.tnseq.orientation_data.tsv positive_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr2:5000001, elapsed 0.0s, est remaining 0.9s, peak mem 415MB, user 0.1s, sys 2.3s, output queue size 130
progress 10% @chr2:118000001, elapsed 0.1s, est remaining 0.7s, peak mem 415MB, user 0.3s, sys 6.9s, output queue size 291
progress 15% @chr2:146000001, elapsed 0.1s, est remaining 0.6s, peak mem 415MB, user 0.4s, sys 10.3s, output queue size 386
progress 20% @chr4:41000001, elapsed 0.1s, est remaining 0.5s, peak mem 415MB, user 0.6s, sys 13.6s, output queue size 547
progress 25% @chr4:180000001, elapsed 0.2s, est remaining 0.5s, peak mem 415MB, user 0.7s, sys 17.0s, output queue size 709
progress 30% @chr5:25000001, elapsed 0.2s, est remaining 0.5s, peak mem 415MB, user 0.8s, sys 20.4s, output queue size 870
progress 35% @chr6:143000001, elapsed 0.2s, est remaining 0.4s, peak mem 415MB, user 0.9s, sys 24.6s, output queue size 1031
progress 40% @chr7:95000001, elapsed 0.3s, est remaining 0.4s, peak mem 415MB, user 1.0s, sys 28.4s, output queue size 1192
progress 45% @chr9:13000001, elapsed 0.3s, est remaining 0.3s, peak mem 415MB, user 1.1s, sys 31.9s, output queue size 1353
progress 50% @chr9:134000001, elapsed 0.3s, est remaining 0.3s, peak mem 415MB, user 1.3s, sys 35.5s, output queue size 1515
progress 55% @chr11:26000001, elapsed 0.3s, est remaining 0.3s, peak mem 415MB, user 1.4s, sys 39.4s, output queue size 1677
progress 60% @chr12:35000001, elapsed 0.4s, est remaining 0.3s, peak mem 415MB, user 1.6s, sys 43.1s, output queue size 1839
progress 65% @chr13:83000001, elapsed 0.4s, est remaining 0.2s, peak mem 415MB, user 1.7s, sys 47.0s, output queue size 2001
progress 70% @chr14:104000001, elapsed 0.4s, est remaining 0.2s, peak mem 415MB, user 1.8s, sys 51.1s, output queue size 2162
progress 75% @chr16:89000001, elapsed 0.5s, est remaining 0.2s, peak mem 415MB, user 2.0s, sys 54.4s, output queue size 2324
progress 80% @chr19:17000001, elapsed 0.5s, est remaining 0.1s, peak mem 415MB, user 2.2s, sys 57.9s, output queue size 2487
progress 85% @chr22:5000001, elapsed 0.5s, est remaining 0.1s, peak mem 417MB, user 2.4s, sys 61.3s, output queue size 2649
progress 90% @chr18:28000001, elapsed 0.6s, est remaining 0.1s, peak mem 417MB, user 2.6s, sys 64.6s, output queue size 2811
progress 95% @chr4_KI270789v1_alt:1, elapsed 0.6s, est remaining 0.0s, peak mem 417MB, user 2.9s, sys 67.6s, output queue size 3106
progress 100% @HLA-DQA1*01:03:01:01:1, elapsed 0.7s, est remaining 0.0s, peak mem 417MB, user 3.1s, sys 80.2s, output queue size 6396
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: 1f8bfbff fffab20b
  extended: f1bf07ab 1a407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8559C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 50711
output file size: 43806
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.000 user 0.000 sys 0.012 real
"predict_filter": 171 calls 0.013 user 0.014 sys 0.028 real
advance: 3219322 calls 0.464 user 25.762 sys 28.861 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.011 user 0.001 sys 0.788 real
fetch_ref: 448 calls 0.000 user 0.053 sys 0.016 real
idle: 20057 calls 0.449 user 0.919 sys 296.726 real
init: 1 calls 0.265 user 0.120 sys 0.478 real
overall: 437522432 mem 4.452 user 84.687 sys 2.375 real