Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/7cea248d695043a789bda3c6f118cf/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/a954511b40e76d107ffbd247f3a138/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/a954511b40e76d107ffbd247f3a138/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/7cea248d695043a789bda3c6f118cf/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:17:24.411417Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:24.412733Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:24.412761Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:24.412767Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:24.412773Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX1quNpv'
[2026-06-08T22:17:24.412777Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:24.412783Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:24.412787Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:24.412792Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:17:24.412795Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:24.412799Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:24.412802Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:24.412806Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:24.412812Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:24.413710Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:24.413785Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:24.422776Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:24.423729Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:24.424212Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:24.424777Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:24.425133Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.425724Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.425823Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.425897Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.426018Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.426084Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.426340Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.426634Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.426712Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.427259Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.427649Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.429177Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.430106Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.430557Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:24.430646Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.430731Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.430849Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.430915Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.431025Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.431087Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.431256Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.431329Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.431489Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.431555Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.431661Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.431734Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.432194Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.432259Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.432369Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.432437Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.432545Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.432670Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.432802Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.432863Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.432975Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.433036Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.433147Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.433251Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.433446Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.433828Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.434099Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.434485Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.434656Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.435072Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.435608Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.435955Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.436069Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.436188Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.436304Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.436368Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.436476Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.436537Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.436650Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.436710Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.436818Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.436879Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.436997Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.437137Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.437631Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.437701Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.437812Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.437873Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.438004Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.438072Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.438181Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.438253Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.438367Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.438428Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.438538Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.438605Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.438905Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.439384Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.439491Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.439555Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.441072Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.441628Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.441754Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.441822Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.441933Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.441997Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.442105Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.442167Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.442275Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.442341Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.442450Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.442516Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.442668Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.443278Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.443390Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.443453Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.443567Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.443633Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.443741Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.443804Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.443921Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.443983Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.459282Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.459773Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.459840Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.460042Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.460109Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.460271Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.460336Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.460462Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.460531Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:24.460579Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:24.462762Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.464004Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.466896Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.467565Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.467716Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T22:17:24.468237Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.470476Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.473258Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T22:17:24.475435Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.475669Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T22:17:24.476459Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.476746Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T22:17:24.477491Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.490254Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:17:24.490722Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T22:17:24.491313Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T22:17:24.491821Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:17:25.299705Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.299802Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.301069Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.301529Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.306339Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T22:17:25.307852Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:17:25.416700Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.417815Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.421299Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T22:17:25.632919Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.633025Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.633998Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.634727Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.639256Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:17:25.640926Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T22:17:26.051203Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.052273Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.056227Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T22:17:26.468103Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.468203Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.469217Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.471291Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.472344Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T22:17:26.475029Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T22:17:26.536270Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.536363Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.537331Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.537591Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.541264Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T22:17:26.542435Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:17:26.602879Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.603908Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.607365Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-08T22:17:26.668486Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.669532Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.672693Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T22:17:26.785845Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.786875Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.790635Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T22:17:26.902000Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.903044Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.906464Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T22:17:27.268510Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.269503Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.273467Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-08T22:17:27.334362Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.335408Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.338972Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:17:27.450268Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.451260Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.454883Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T22:17:27.484155Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.485214Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.488931Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T22:17:27.489759Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.490694Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.494235Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T22:17:27.756015Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.756999Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.760246Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T22:17:27.821437Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.822442Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.826759Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T22:17:28.088654Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.089673Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.092815Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:17:28.155717Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.157202Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.160851Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:17:28.221843Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.223132Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.226216Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-08T22:17:28.287228Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.287316Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.288558Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.289241Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.293795Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:17:28.294816Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:17:28.354584Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.354680Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.356135Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.356732Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.361091Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-08T22:17:28.362570Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T22:17:28.421909Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.423137Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.426103Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T22:17:28.788213Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.789604Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.793487Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-08T22:17:28.854158Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.854246Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.855398Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.856121Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.860424Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T22:17:28.862023Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:17:28.921507Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.922709Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.926130Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T22:17:28.987258Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.988543Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.991739Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-08T22:17:29.053041Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.053168Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.054303Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.055024Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.060024Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:17:29.061461Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T22:17:29.088004Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.089239Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.092994Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T22:17:29.204303Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.205584Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.208982Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-08T22:17:29.269945Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.271088Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.274751Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T22:17:29.335906Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.337082Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.341099Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T22:17:29.369592Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.370599Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.374460Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:17:29.435609Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.436774Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.440270Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-08T22:17:29.501164Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.502366Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.506194Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T22:17:29.567244Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.568571Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.572149Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-08T22:17:29.633099Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.634232Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.637746Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:17:29.749101Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.750253Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.753563Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T22:17:29.814633Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.814747Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.815997Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.816423Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.821415Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T22:17:29.822698Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:17:29.881648Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.882725Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.886370Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:17:30.047657Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.048780Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.052498Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:17:30.213666Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.213781Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.214815Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.215229Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.219656Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:17:30.250979Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:17:30.280315Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.280421Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.281557Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.282187Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.286637Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T22:17:30.287552Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:17:30.447734Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.448577Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.452578Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T22:17:30.514572Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.515343Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.519390Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T22:17:30.730869Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.731661Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.735331Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T22:17:30.796464Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.797309Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.801264Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:17:30.962435Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.963186Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.966624Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:17:31.027897Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.028051Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.028077Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.028766Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.029449Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.030331Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.036224Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T22:17:31.036944Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-08T22:17:31.068467Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:17:31.095380Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.096118Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.099578Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T22:17:31.104443Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.105108Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.108113Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:17:31.137396Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.138191Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.140722Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.141343Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:17:31.141993Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.145553Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:17:31.174922Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.175605Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.178694Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-08T22:17:31.240089Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.240826Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.244280Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T22:17:31.355708Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.356283Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.360143Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-08T22:17:31.420935Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.421591Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.424445Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T22:17:31.437608Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.438182Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.441068Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T22:17:31.470226Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.470742Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.473577Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T22:17:31.685507Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.686146Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.688814Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T22:17:31.718304Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.718821Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.721333Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:17:31.751822Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.752325Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.754828Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:17:31.817282Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.817789Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.820652Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:17:31.851043Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.851521Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.854160Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:17:31.859427Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.859903Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.862513Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T22:17:31.891986Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.892458Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.894702Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:17:31.925318Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.925387Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.925413Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.925827Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.926444Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.927094Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.929527Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:17:31.931022Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-08T22:17:31.931964Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T22:17:31.935573Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.936037Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.939504Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-08T22:17:31.968332Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.968411Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.968439Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.972070Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.086102Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.086543Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.089950Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T22:17:32.150798Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.214773Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.215189Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.218507Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:17:32.279532Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.279613Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.280272Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.283271Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-08T22:17:32.284069Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.284486Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.286902Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-08T22:17:32.316354Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.317097Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.317305Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.317427Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.317923Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.318788Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.321888Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:32.323639Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:32.324413Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:32.351670Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.351732Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.351754Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.351925Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.352514Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.354917Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:32.355609Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:32.384954Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.385023Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.385182Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.387763Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:32.417272Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:35.036336Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:43.302661Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:43.302661Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] 
[2026-06-08T22:17:43.302661Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:43.302729Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] 
[2026-06-08T22:17:43.302737Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:43.302744Z] [nf-cf7cea248d695043a789bda3c6f118cf-c0373-78nft] [597_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec