Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/00640270fca9413f23e3dacc933d10/vcfs/germline_control_1.vcf Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/b67c3dbc4bef1905d596c737be2356/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/b67c3dbc4bef1905d596c737be2356/.command.run ==> STAGING COMPLETE (3 inputs) ls: *.csi: No such file or directory