.command.sh - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_GERMLINE_VC:BGZIPTABIX_GERMLINE_CNV (germline_control_1;germline_cnv)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/af/b67c3dbc4bef1905d596c737be2356/.command.sh
Size: 341 bytes
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_GERMLINE_VC:BGZIPTABIX_GERMLINE_CNV (germline_control_1;germline_cnv)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bgzip  --threads 1 -c  germline_control_1.vcf > germline_control_1.vcf.gz
tabix --threads 1  germline_control_1.vcf.gz

cat <<-END_VERSIONS > versions.yml
"DAQ:CONTROL_VARIANT_CALLING:CONTROL_GERMLINE_VC:BGZIPTABIX_GERMLINE_CNV":
    tabix: $(echo $(tabix -h 2>&1) | sed 's/^.*Version: //; s/ .*$//')
END_VERSIONS