cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.8s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 2916
progress 10% @chr2:19978751, elapsed 0.1s, est remaining 0.7s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 3487
progress 15% @chr2:182732499, elapsed 0.1s, est remaining 0.7s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 13889
progress 20% @chr3:97961589, elapsed 0.2s, est remaining 0.6s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 24371
progress 25% @chr4:88457270, elapsed 0.2s, est remaining 0.6s, peak mem 161MB, user 0.0s, sys 0.0s, output queue size 10009
progress 30% @chr5:147418447, elapsed 0.2s, est remaining 0.6s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 20057
progress 35% @chr6:127144950, elapsed 0.3s, est remaining 0.5s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 29985
progress 40% @chr7:128773649, elapsed 0.3s, est remaining 0.5s, peak mem 170MB, user 0.0s, sys 0.0s, output queue size 39485
progress 45% @chr9:977002, elapsed 0.4s, est remaining 0.4s, peak mem 290MB, user 0.0s, sys 0.1s, output queue size 7269
progress 50% @chr10:32292988, elapsed 0.4s, est remaining 0.4s, peak mem 290MB, user 0.0s, sys 0.1s, output queue size 17206
progress 55% @chr11:48216810, elapsed 0.4s, est remaining 0.4s, peak mem 290MB, user 0.0s, sys 0.1s, output queue size 27672
progress 60% @chr12:21916937, elapsed 0.5s, est remaining 0.3s, peak mem 290MB, user 0.0s, sys 0.1s, output queue size 37222
progress 65% @chr13:49267490, elapsed 0.5s, est remaining 0.3s, peak mem 290MB, user 0.0s, sys 0.1s, output queue size 48275
progress 70% @chr15:42561270, elapsed 0.6s, est remaining 0.2s, peak mem 293MB, user 0.0s, sys 0.1s, output queue size 58308
progress 75% @chr16:30953185, elapsed 0.6s, est remaining 0.2s, peak mem 293MB, user 0.0s, sys 0.1s, output queue size 67877
progress 80% @chr17:42543028, elapsed 0.6s, est remaining 0.2s, peak mem 293MB, user 0.0s, sys 0.1s, output queue size 78558
progress 85% @chr19:5719704, elapsed 0.7s, est remaining 0.1s, peak mem 329MB, user 0.0s, sys 0.1s, output queue size 88995
progress 90% @chr19:55711800, elapsed 0.7s, est remaining 0.1s, peak mem 329MB, user 0.0s, sys 0.1s, output queue size 98473
progress 95% @chr22:36936517, elapsed 1.1s, est remaining 0.1s, peak mem 2498MB, user 6.1s, sys 1.8s, output queue size 3223
progress 100% @chr6_GL000251v2_alt:3935649, elapsed 1.1s, est remaining 0.0s, peak mem 2498MB, user 6.3s, sys 1.8s, output queue size 2385
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 51395348
reads: 1001089
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.701 user 0.125 sys 2.197 real
done: 1 calls 0.263 user 0.098 sys 0.362 real
execute: 1 calls 0.006 user 0.002 sys 1.106 real
fetch_reads: 208647 calls 0.084 user 0.002 sys 0.145 real
fetch_ref: 2042 calls 0.011 user 0.029 sys 0.019 real
fetch_vcf: 2042 calls 0.961 user 0.057 sys 0.981 real
idle: 92 calls 0.002 user 0.001 sys 31.630 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2207 calls 4.124 user 1.572 sys 6.732 real
overall: 2620272640 mem 9.377 user 11.846 sys 2.477 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory