Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/94c5aa137d4bc67f2627376c75c2cd/germline_control_1.haplotyper.unfiltered.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/b4f7c2d9daf5c0d812af86aacc4bee/germline_control_1.dv_rescue.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/5a428658e94bcd48d267976bdb207b/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/5a428658e94bcd48d267976bdb207b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/b4f7c2d9daf5c0d812af86aacc4bee/germline_control_1.dv_rescue.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/94c5aa137d4bc67f2627376c75c2cd/germline_control_1.haplotyper.unfiltered.vcf.gz
==> STAGING COMPLETE (6 inputs)

INFO: Loading Sentieon variant positions...
INFO:   358 variant positions in Sentieon VCF
INFO: Scanning DeepVariant VCF for novel INDEL positions...
INFO:   0 PASS INDELs in DeepVariant VCF
INFO:   0 novel positions (not in Sentieon) -> written to germline_control_1.dv_only_sites.vcf.gz