Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/02be44bdb567d668b68930eb114a44/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/02be44bdb567d668b68930eb114a44/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/d1e96bfdd243f35cecbdbd35c5ccc5/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/02be44bdb567d668b68930eb114a44/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/094b913fc03b3ccfaf6cd1c777a9c8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/094b913fc03b3ccfaf6cd1c777a9c8/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-8tkk2_ar because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:24:25,161 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:24:26,153 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:24:26,330 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:24:27,284 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:24:27,453 - cnv_pipe.batch.run_model - INFO - Processing cluster 1881 with 146 probes
2026-06-08 22:24:27,825 - cnv_pipe.batch.run_model.cluster1881 - INFO - Child process started for cluster 1881 with 146 probes
2026-06-08 22:25:12,552 - cnv_pipe.batch.run_model.cluster1881 - INFO - Child process finished cluster 1881. Wrote cluster_1881_samples.csv and cluster_1881_params.csv
2026-06-08 22:25:12,553 - cnv_pipe.batch.run_model - INFO - Cluster 1881 finished in 45.10 seconds. Status: SUCCESS