Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/1e048d94bbc98f44884bc9c94b54e4/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/6b3013e9d9b82eec558f6b032b640e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/1e048d94bbc98f44884bc9c94b54e4/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/6b3013e9d9b82eec558f6b032b640e/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:17:21.903897Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:21.904859Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:21.904882Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:21.904889Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:21.904893Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXX0cAUD'
[2026-06-08T22:17:21.904896Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:21.904901Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:21.904905Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:21.904908Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:17:21.904912Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:21.904916Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:21.904919Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:21.904923Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:21.904926Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:21.905629Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:21.905716Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:21.911500Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:21.912149Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:21.912342Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:21.912513Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:21.912756Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.913397Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.913488Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.913557Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.913671Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.913768Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.914044Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.914120Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.914237Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.914604Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.914756Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.916212Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.916537Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.919067Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.919385Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.919665Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:21.920188Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.920524Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.920681Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.920756Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.920985Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.921061Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.921184Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.921280Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.921396Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.921461Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.922205Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.922446Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.922559Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.922622Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.922730Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.922796Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.922915Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.922974Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.923093Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.923158Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.923266Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.923327Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.923436Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.923674Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.924096Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.924167Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.924285Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.924349Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.924457Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.924520Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.924633Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.924790Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.924908Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.924978Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.925857Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.926162Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.926294Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.926362Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.926482Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.926545Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.926719Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.926792Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.926898Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.926972Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.927165Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.927338Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.927821Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.927888Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.942671Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.943063Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.943136Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.943296Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.943367Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.943450Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.943518Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.943620Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.943688Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.943736Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:21.948955Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.949574Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.950236Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.950821Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.951830Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.952334Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.952756Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.954406Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.955856Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.961628Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:17:21.968097Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:17:21.971541Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:17:21.976170Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:17:21.977858Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:17:21.978729Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:17:21.981490Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:17:22.540362Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:17:22.575299Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.575393Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.576187Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.576806Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.579913Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:17:22.582269Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:17:22.641403Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.642162Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.644750Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:17:22.706569Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.707448Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.710666Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:17:22.972184Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.972904Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.976135Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:17:23.087461Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.087571Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.088257Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.088990Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.092128Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:17:23.093337Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:17:23.153586Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.154302Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.157169Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:17:23.218399Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.218501Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.218526Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.219213Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.219957Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.222120Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.222615Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:17:23.226160Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:17:23.255365Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.256064Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.258649Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:17:23.271847Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.272524Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.275581Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:17:23.279918Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:17:23.280571Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.281422Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.281776Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.283878Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.285506Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:17:23.286164Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:17:23.291979Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.292597Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.295896Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:17:23.325027Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.326877Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.330301Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:17:23.343174Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.343796Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.346484Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:17:23.407825Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.408540Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.411652Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:17:23.773798Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.774465Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.777676Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:17:23.782610Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.783247Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.786262Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:17:23.815601Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.816277Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.819542Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:17:23.848795Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.849487Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.853524Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:17:23.915239Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.915976Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.919993Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:17:23.980831Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.981548Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.984771Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:17:24.346997Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.347899Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.348553Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.350844Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.352809Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:17:24.353773Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:17:24.384025Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.384746Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.385482Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.387565Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.388141Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:17:24.390815Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:17:24.420116Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.420757Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.421925Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.424291Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.424733Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:17:24.427155Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:17:24.432463Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.433006Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.435333Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:17:24.466150Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.466237Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.466780Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.468588Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.470846Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:17:24.471740Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:17:24.533360Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.533477Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.533508Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.534079Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.534765Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.535150Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.538152Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:17:24.539124Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:17:24.541917Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:17:24.570830Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.570937Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.571469Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.572155Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.575248Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:17:24.576501Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:17:24.638442Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.639072Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.642312Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:17:24.703733Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.704328Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.707785Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:17:24.736665Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.737326Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.740306Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:17:24.745035Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.745552Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.747969Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:17:24.777461Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.777548Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.778042Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.778785Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.781779Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:17:24.781966Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.783689Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.784441Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:17:24.786798Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:17:24.847983Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.848070Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.848094Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.848557Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.848838Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.849540Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.852719Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:17:24.854418Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:17:24.856216Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:17:24.915640Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.915737Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.915775Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.916258Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.919002Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:17:24.980390Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.345369Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.345900Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.348924Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:17:25.378100Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.378607Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.381722Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:17:25.386805Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.418893Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.683516Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.684040Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.687113Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:17:25.749653Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.914190Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.914690Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.918458Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:17:25.979215Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.344322Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.344843Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.348218Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:17:26.410767Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.411088Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.411284Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.412021Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.412813Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.416822Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:26.418731Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:26.419936Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:26.446674Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.447003Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.449909Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.450368Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:26.451273Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.451501Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.454054Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:26.484781Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.486268Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.486513Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.489493Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:26.551006Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.567757Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:32.443113Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:32.443113Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] 
[2026-06-08T22:17:32.443113Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:32.443156Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] 
[2026-06-08T22:17:32.443163Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:32.443169Z] [nf-1f6b3013e9d9b82eec558f6b032b640e-5f453-g96j9] [591_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec