File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/6df77d3bd92942a90ff14809d8189e/.command.err
Size
87.5 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr20_14085521-14085828.bed)
Attempt

Content

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[2026-06-08T22:17:21.594250Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:21.698800Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:21.698833Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:21.698839Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:21.698843Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXi5AL8J'
[2026-06-08T22:17:21.698847Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:21.698852Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:21.698856Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:21.698859Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:17:21.698863Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:21.698867Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:21.698870Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:21.698874Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:21.698878Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:21.699836Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:21.699895Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:21.705677Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:21.706522Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:21.706754Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:21.706870Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:21.707449Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.708171Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.708309Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.708388Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.708515Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.708586Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.708715Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.708783Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.708918Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.709089Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.709469Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.709582Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.709824Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.709961Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.710412Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.710931Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.711259Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.712501Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.712962Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.713766Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.714050Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.714262Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:21.714437Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.714517Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.714634Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.714699Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.714816Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.714881Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.714992Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.715132Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.715558Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.715630Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.715749Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.715811Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.715922Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.715987Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.716101Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.716166Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.716279Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.716358Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.716528Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.716663Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.717205Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.717594Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.717706Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.717766Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.717874Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.717989Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.718100Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.718164Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.718267Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.718333Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.718439Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.718500Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.718657Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.719135Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.719249Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.719317Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.719421Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.719485Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.719593Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.719652Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.719763Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.719823Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.719927Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.719990Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.720098Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.720312Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.721286Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.721348Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.721456Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.721520Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.721630Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.721692Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.722918Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.723438Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.723563Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.723631Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.723743Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.723805Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.723917Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.723978Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.724090Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.724151Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.724262Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.724331Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.724442Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.724564Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.725215Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.725278Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.725386Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.725450Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.725555Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.725616Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.725728Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.725787Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.725900Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.725959Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.740161Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.740816Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.740888Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.741131Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.741201Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.741298Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.741362Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.741489Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.741554Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:21.741598Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:21.745890Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.746676Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.746953Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.748832Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.749514Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:17:21.750435Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.752927Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-08T22:17:21.753087Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.756065Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.757236Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-08T22:17:21.757755Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.758515Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.763417Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:17:21.768613Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-08T22:17:21.772222Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:17:21.772506Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-08T22:17:21.773226Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:17:21.826766Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.827971Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.837692Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:17:21.863340Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.863402Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.864391Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.864933Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.867273Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.867658Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:17:21.870119Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.870366Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-08T22:17:21.871081Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.872963Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.873292Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T22:17:21.875902Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:17:21.905133Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.906016Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.911291Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:17:22.021989Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.022939Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.026105Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:17:22.087319Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.088256Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.091483Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:17:22.152867Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.153851Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.157673Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-08T22:17:22.218845Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.219919Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.223127Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:17:22.484922Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.485945Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.489469Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:17:22.518849Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.519888Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.522855Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T22:17:22.585705Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.586720Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.589991Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-08T22:17:23.052062Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.052167Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.053122Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.053991Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.058590Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-08T22:17:23.059916Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:17:23.422294Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.423352Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.426954Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T22:17:23.588332Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.589416Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.593066Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-08T22:17:23.754682Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.755721Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.759565Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-08T22:17:23.788356Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.789359Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.792765Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:17:23.853979Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.854947Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.858569Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:17:23.919968Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.920981Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.924895Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-08T22:17:23.986407Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.986505Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.987525Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.989757Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.991816Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:17:23.992786Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:17:24.055966Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.056060Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.056944Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.057432Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.061307Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:17:24.061961Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:17:24.173623Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.174602Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.177678Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-08T22:17:24.238967Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.239951Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.243149Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:17:24.305049Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.305992Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.309484Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:17:24.370774Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.370874Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.371767Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.372489Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.377338Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:17:24.379014Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T22:17:24.438140Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.439091Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.443264Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:17:24.504425Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.505336Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.509078Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:17:24.571735Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.572700Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.577057Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:17:24.688294Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.689135Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.693323Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:17:24.754471Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.755419Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.759299Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-08T22:17:24.820478Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.821397Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.824852Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-08T22:17:24.886024Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.886916Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.891453Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-08T22:17:25.403774Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.404701Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.408540Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-08T22:17:25.519741Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.520632Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.524415Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:17:25.585686Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.586575Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.590106Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:17:25.651273Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.652161Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.655502Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:17:25.684829Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.685684Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.688821Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-08T22:17:25.718082Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.718910Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.721906Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:17:25.724003Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.724649Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.727703Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:17:25.757112Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.757902Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.761102Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-08T22:17:26.073283Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.073398Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.074180Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.076400Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.078405Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-08T22:17:26.079604Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:17:26.140781Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.140864Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.141578Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.141977Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.145507Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:17:26.147060Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:17:26.174639Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.175409Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.179421Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-08T22:17:26.179743Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.180419Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.183642Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T22:17:26.212692Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.213413Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.216710Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-08T22:17:26.217713Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.218416Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.221387Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:17:26.251198Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.251920Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.255397Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:17:26.284287Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.284935Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.288842Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-08T22:17:26.317242Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.317943Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.321548Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-08T22:17:26.532967Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.533732Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.536697Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:17:26.598277Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.598903Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.603662Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-08T22:17:26.764878Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.765665Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.768802Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:17:26.830288Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.831028Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.834212Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-08T22:17:26.995932Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.996705Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.000004Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:17:27.061166Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.061841Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.065140Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-08T22:17:27.126222Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.126944Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.130010Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:17:27.192537Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.193246Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.197217Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-08T22:17:27.259393Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.260084Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.263142Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:17:27.324644Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.325345Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.329315Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-08T22:17:27.390675Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.391401Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.395331Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:17:27.456408Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.457208Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.460490Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-08T22:17:27.521723Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.521805Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.522444Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.523147Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.527901Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T22:17:27.529523Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-08T22:17:27.588831Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.589574Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.593231Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-08T22:17:27.754664Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.755414Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.758748Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-08T22:17:27.819976Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.820685Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.823833Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:17:27.885288Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.885997Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.889590Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-08T22:17:28.001026Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.001706Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.004830Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:17:28.067440Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.068095Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.071921Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T22:17:28.132990Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.133655Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.137786Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-08T22:17:28.166575Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.167293Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.170934Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:17:28.171886Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.172461Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.175417Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-08T22:17:28.237433Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.237523Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.238102Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.238711Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.242025Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:17:28.243160Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:17:28.305012Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.305100Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.305136Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.305679Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.306525Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.311175Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-08T22:17:28.312443Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-08T22:17:28.372029Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.687187Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.687916Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.691894Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-08T22:17:28.752755Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.017606Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.018229Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.021426Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-08T22:17:29.082835Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.748403Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.749047Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.752585Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-08T22:17:29.814655Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.928792Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.929267Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.932194Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-08T22:17:29.993494Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.608820Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.609464Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.612505Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-08T22:17:30.641847Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.563325Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.563925Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.567123Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T22:17:34.628364Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.628626Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.628740Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.629240Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.629756Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.634924Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:34.635190Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:34.636077Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:34.665187Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.665241Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.665263Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.665434Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.666710Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.667735Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:34.670193Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:34.699261Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.699315Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.699473Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.702577Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:34.733030Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:40.649751Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:54.818750Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:54.818750Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] 
[2026-06-08T22:17:54.818750Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:54.818829Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] 
[2026-06-08T22:17:54.818838Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:54.818845Z] [nf-386df77d3bd92942a90ff14809d8189e-19375-sk9pf] [664_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec