cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --algo AlignmentStat HCC1395_tumor.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo HCC1395_tumor.sentieon.insert_size_metrics --algo QualDistribution HCC1395_tumor.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle HCC1395_tumor.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle HCC1395_tumor.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:158000001, elapsed 0.0s, est remaining 0.6s, peak mem 78MB, user 0.1s, sys 0.5s, output queue size 3
progress 10% @chr2:74000001, elapsed 0.1s, est remaining 0.5s, peak mem 78MB, user 0.3s, sys 1.0s, output queue size 16
progress 15% @chr2:221000001, elapsed 0.1s, est remaining 0.4s, peak mem 78MB, user 0.4s, sys 1.7s, output queue size 14
progress 20% @chr3:152000001, elapsed 0.1s, est remaining 0.4s, peak mem 78MB, user 0.6s, sys 2.3s, output queue size 7
progress 25% @chr4:102000001, elapsed 0.1s, est remaining 0.4s, peak mem 78MB, user 0.7s, sys 2.8s, output queue size 13
progress 30% @chr5:86000001, elapsed 0.2s, est remaining 0.4s, peak mem 78MB, user 0.9s, sys 3.4s, output queue size 13
progress 35% @chr6:53000001, elapsed 0.2s, est remaining 0.3s, peak mem 78MB, user 1.1s, sys 4.0s, output queue size 12
progress 40% @chr7:41000001, elapsed 0.2s, est remaining 0.3s, peak mem 78MB, user 1.2s, sys 4.5s, output queue size 14
progress 45% @chr8:58000001, elapsed 0.2s, est remaining 0.3s, peak mem 78MB, user 1.3s, sys 5.3s, output queue size 11
progress 50% @chr9:76000001, elapsed 0.3s, est remaining 0.3s, peak mem 78MB, user 1.5s, sys 5.7s, output queue size 11
progress 55% @chr10:97000001, elapsed 0.3s, est remaining 0.2s, peak mem 78MB, user 1.7s, sys 6.4s, output queue size 8
progress 60% @chr11:123000001, elapsed 0.3s, est remaining 0.2s, peak mem 78MB, user 1.9s, sys 6.8s, output queue size 14
progress 65% @chr13:17000001, elapsed 0.3s, est remaining 0.2s, peak mem 78MB, user 2.2s, sys 7.3s, output queue size 11
progress 70% @chr14:61000001, elapsed 0.3s, est remaining 0.1s, peak mem 78MB, user 2.5s, sys 7.7s, output queue size 3
progress 75% @chr16:16000001, elapsed 0.4s, est remaining 0.1s, peak mem 78MB, user 2.6s, sys 8.4s, output queue size 9
progress 80% @chr17:81000001, elapsed 0.4s, est remaining 0.1s, peak mem 78MB, user 2.8s, sys 8.9s, output queue size 16
progress 85% @chr20:21000001, elapsed 0.4s, est remaining 0.1s, peak mem 78MB, user 2.9s, sys 9.4s, output queue size 17
progress 90% @chrX:42000001, elapsed 0.5s, est remaining 0.1s, peak mem 93MB, user 3.4s, sys 9.9s, output queue size 114
progress 95% @chrY:37000001, elapsed 0.5s, est remaining 0.0s, peak mem 108MB, user 4.0s, sys 10.4s, output queue size 276
progress 100% @chr21:41000001, elapsed 1.2s, est remaining 0.0s, peak mem 129MB, user 6.9s, sys 11.0s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 50813899
reads: 1001320
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.091 user 5.487 sys 6.897 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.007 user 0.003 sys 1.204 real
idle: 82 calls 0.013 user 0.018 sys 49.131 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 135348224 mem 7.139 user 11.497 sys 2.249 real