Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/c19daff522e231c58681dfd8fb1cfe/positive_somatic_control_1.snv_indel.strelka.indel.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/8bb75001b0259331536b3c07a28ab2/positive_somatic_control_1.snv_indel.tnseq.snv.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/92/c19daff522e231c58681dfd8fb1cfe/positive_somatic_control_1.snv_indel.strelka.indel.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/8a0ea9f4cf38527dbebc8eee116019/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/8a0ea9f4cf38527dbebc8eee116019/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/8bb75001b0259331536b3c07a28ab2/positive_somatic_control_1.snv_indel.tnseq.snv.vcf.gz
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
[W::hts_idx_load3] The index file is older than the data file: positive_somatic_control_1.snv_indel.tnseq.snv.vcf.gz.tbi
ls: positive_somatic_control_1.snv_indel.merged.vcf.gz.csi: No such file or directory