File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/e0f0eec12f1d47bdb486e6b1d010e3/.command.err
Size
68.3 KB
Attempt
[2026-06-08T22:17:15.004861Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:15.019095Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:15.019130Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:15.019136Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:15.019141Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAhQou9'
[2026-06-08T22:17:15.019145Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:15.019151Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:15.019155Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:15.019158Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T22:17:15.019162Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:15.019165Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:15.019169Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:15.019173Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:15.019177Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:15.019969Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:15.020102Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:15.025878Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:15.026740Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:15.026998Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:15.027293Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:15.027866Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.028653Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.028901Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.029127Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.029312Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.029528Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.029614Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.029728Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.029921Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.030595Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.030824Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.032201Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.033027Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.033465Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.033579Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:15.033738Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.033867Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.033935Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034052Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034115Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034300Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034562Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034930Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035004Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035120Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035184Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035307Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035374Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035488Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035564Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035718Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035795Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035957Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036290Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036406Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036475Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036587Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036651Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036769Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036841Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036956Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.037018Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.037131Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.037198Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.037328Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.037501Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.037960Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038027Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038189Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038267Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038406Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038475Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038600Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038665Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038787Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038856Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.039037Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.039258Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.039615Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.040327Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.040817Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.040889Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041012Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041084Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041200Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041273Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041389Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041458Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041570Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041639Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041783Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041919Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.042610Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.042677Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.059138Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.059561Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.059641Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.059814Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.059886Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.059974Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.060041Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.060155Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.060244Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.060290Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:15.061009Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.061863Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.062502Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.063252Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.064213Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.065205Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.066174Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.069397Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.069782Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T22:17:15.072823Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-06-08T22:17:15.073241Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.077536Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:17:15.081298Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-06-08T22:17:15.083696Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-06-08T22:17:15.086021Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:17:15.089147Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T22:17:15.090348Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T22:17:15.142212Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.142907Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.146251Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T22:17:15.174814Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.175553Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.178416Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:17:16.042271Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.043137Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.047143Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T22:17:16.358634Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.359497Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.362783Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:17:16.474092Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.474969Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.478640Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-06-08T22:17:16.890708Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.891587Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.894876Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-06-08T22:17:16.923932Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.924014Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.924791Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.925187Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.928539Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:17:16.929195Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.929629Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-06-08T22:17:16.930287Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.933463Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-06-08T22:17:16.962569Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.962633Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.963293Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.963717Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.967493Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:17:16.968736Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-06-08T22:17:17.029896Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.031057Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.034826Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-06-08T22:17:17.047468Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.048282Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.051365Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:17:17.162814Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.163678Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.166777Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-06-08T22:17:17.229363Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.230182Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.234304Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:17:17.846141Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.846230Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.846966Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.847336Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.851107Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-06-08T22:17:17.852174Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:17:17.912128Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.912999Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.916491Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-06-08T22:17:17.977488Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.978312Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.981761Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:17:18.042940Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.043851Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.047005Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-06-08T22:17:18.108236Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.109059Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.112236Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-06-08T22:17:18.173668Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.174477Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.177857Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-06-08T22:17:18.239097Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.239893Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.242978Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T22:17:18.404591Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.405393Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.408577Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:17:18.469951Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.470746Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.474057Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T22:17:18.535692Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.536562Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.539943Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-06-08T22:17:18.568677Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.569408Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.572350Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:17:18.573232Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.573869Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.576819Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-06-08T22:17:18.638119Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.638861Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.642211Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T22:17:19.405457Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.406195Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.409167Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:17:19.521142Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.521890Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.525875Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-06-08T22:17:19.538206Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.538872Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.541896Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:17:19.603692Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.604412Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.608213Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:17:19.669099Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.669802Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.673065Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:17:19.734610Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.734696Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.735352Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.736126Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.739786Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-06-08T22:17:19.740781Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:17:19.802102Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.802192Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.802223Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.802246Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.802884Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.803257Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.803576Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.804095Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.807959Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:17:19.811107Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-06-08T22:17:19.812372Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T22:17:19.841835Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:17:19.872008Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.872098Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.872123Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.872765Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.873149Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.873410Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.876971Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:17:19.878657Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:17:19.879923Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-06-08T22:17:19.907813Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.907906Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.908530Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.908875Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.914694Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.915270Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-06-08T22:17:19.916104Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:17:19.916235Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.918258Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.918878Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.919563Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-06-08T22:17:19.922551Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T22:17:19.983469Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.984200Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.987565Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T22:17:20.199057Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.199705Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.202678Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-06-08T22:17:20.264275Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.265078Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.269245Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-06-08T22:17:20.330173Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.330900Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.335208Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T22:17:20.797690Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.798430Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.802716Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-06-08T22:17:20.863555Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.863777Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.864472Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.865005Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.868872Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-06-08T22:17:20.870157Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-06-08T22:17:20.930621Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.930744Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.931400Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.931845Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.935702Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-06-08T22:17:20.936662Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:17:20.996755Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.996838Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.997429Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.997812Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.001504Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:17:21.002649Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-06-08T22:17:21.062607Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.127115Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.127689Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.131283Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-06-08T22:17:21.192429Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.257328Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.257878Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.261571Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-06-08T22:17:21.322625Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.738095Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.738640Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.742666Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-06-08T22:17:21.803781Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.805556Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.805987Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.809551Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-06-08T22:17:21.870775Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.185628Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.186154Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.189442Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-06-08T22:17:22.250631Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.465417Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.466004Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.469676Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:17:22.530622Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.745396Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.745961Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.749442Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-06-08T22:17:22.810455Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.810784Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.810961Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.811307Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.811603Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.816941Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:22.818356Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:22.843968Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.844311Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.846158Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:22.847315Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:22.848450Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.848485Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.848651Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.851756Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:22.880643Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.882040Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.882241Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.885409Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:22.914433Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.635297Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:33.907957Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:33.907957Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] 
[2026-06-08T22:17:33.907957Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:33.908039Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] 
[2026-06-08T22:17:33.908054Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:33.908062Z] [nf-bbe0f0eec12f1d47bdb486e6b1d010e3-69be9-krjwc] [580_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec