cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119911554, elapsed 0.0s, est remaining 0.7s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 506
progress 10% @chr2:17785862, elapsed 0.1s, est remaining 0.6s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 5577
progress 15% @chr2:189045179, elapsed 0.1s, est remaining 0.6s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 2280
progress 20% @chr3:97959051, elapsed 0.1s, est remaining 0.5s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 12767
progress 25% @chr4:88405554, elapsed 0.2s, est remaining 0.5s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 23012
progress 30% @chr5:146878591, elapsed 0.2s, est remaining 0.5s, peak mem 160MB, user 0.0s, sys 0.0s, output queue size 33059
progress 35% @chr6:127119291, elapsed 0.2s, est remaining 0.4s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 985
progress 40% @chr7:128811800, elapsed 0.3s, est remaining 0.4s, peak mem 163MB, user 0.0s, sys 0.0s, output queue size 10444
progress 45% @chr9:2007196, elapsed 0.3s, est remaining 0.4s, peak mem 259MB, user 0.0s, sys 0.0s, output queue size 19815
progress 50% @chr10:32026460, elapsed 0.3s, est remaining 0.3s, peak mem 289MB, user 0.0s, sys 0.1s, output queue size 29754
progress 55% @chr11:48306223, elapsed 0.4s, est remaining 0.3s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 40217
progress 60% @chr12:21828958, elapsed 0.4s, est remaining 0.3s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 49764
progress 65% @chr13:49220338, elapsed 0.4s, est remaining 0.2s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 60811
progress 70% @chr15:42663281, elapsed 0.5s, est remaining 0.2s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 70851
progress 75% @chr16:30947052, elapsed 0.5s, est remaining 0.2s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 80420
progress 80% @chr17:42554669, elapsed 0.5s, est remaining 0.1s, peak mem 298MB, user 0.0s, sys 0.1s, output queue size 91109
progress 85% @chr19:5567665, elapsed 0.6s, est remaining 0.1s, peak mem 325MB, user 0.0s, sys 0.1s, output queue size 101515
progress 90% @chr19:55712420, elapsed 0.6s, est remaining 0.1s, peak mem 325MB, user 0.0s, sys 0.1s, output queue size 111015
progress 95% @chr22:36564351, elapsed 0.9s, est remaining 0.0s, peak mem 2497MB, user 6.5s, sys 1.8s, output queue size 3251
progress 100% @chrY:57184264, elapsed 1.0s, est remaining 0.0s, peak mem 2497MB, user 6.7s, sys 1.8s, output queue size 7668
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
input file size: 52290599
reads: 1001133
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.696 user 0.074 sys 2.210 real
done: 1 calls 0.257 user 0.111 sys 0.370 real
execute: 1 calls 0.007 user 0.001 sys 0.989 real
fetch_reads: 208647 calls 0.051 user 0.000 sys 0.156 real
fetch_ref: 2072 calls 0.021 user 0.005 sys 0.018 real
fetch_vcf: 2072 calls 1.140 user 0.082 sys 0.989 real
idle: 92 calls 0.002 user 0.001 sys 31.771 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2257 calls 4.592 user 1.666 sys 6.994 real
overall: 2618527744 mem 10.325 user 8.244 sys 2.359 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory