File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/c3b3e53656cc425f9075e39edd9cc0/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-u26_yk8q because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:23:53,023 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:23:53,834 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:23:54,008 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:23:55,124 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:23:55,345 - cnv_pipe.batch.run_model - INFO - Processing cluster 1503 with 150 probes
2026-06-08 22:23:55,726 - cnv_pipe.batch.run_model.cluster1503 - INFO - Child process started for cluster 1503 with 150 probes
2026-06-08 22:24:42,870 - cnv_pipe.batch.run_model.cluster1503 - INFO - Child process finished cluster 1503. Wrote cluster_1503_samples.csv and cluster_1503_params.csv
2026-06-08 22:24:42,871 - cnv_pipe.batch.run_model - INFO - Cluster 1503 finished in 47.53 seconds. Status: SUCCESS