.command.sh - Workdir - DAQ:GERMLINE_CNV:AggregateBatchPerSampleData (Sig_18_tissue)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/11f91a0f22f3889458b9195f35d57d/.command.sh
Size: 263 bytes
Task: DAQ:GERMLINE_CNV:AggregateBatchPerSampleData (Sig_18_tissue)
Attempt

Content

#!/bin/bash -Ceuo pipefail
cnv_pipe aggregate-sample-data \
    Sig_18_tissue \
    clusters/ \
    counts_1.parquet \
    altera_v3_panel.bed \
    altera_v3_blacklist.bed \
    clustered_panel.csv \
    ploidy_1.parquet \
    Sig_18_tissue_probe_sample.parquet