Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/02be44bdb567d668b68930eb114a44/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/02be44bdb567d668b68930eb114a44/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/d1e96bfdd243f35cecbdbd35c5ccc5/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/02be44bdb567d668b68930eb114a44/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/9f9b39696c81a0161f17fa403bd1fe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/9f9b39696c81a0161f17fa403bd1fe/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-9_2xfkj3 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:23:35,074 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:23:35,865 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:23:36,036 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:23:37,071 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:23:37,142 - cnv_pipe.batch.run_model - INFO - Processing cluster 745 with 177 probes
2026-06-08 22:23:37,610 - cnv_pipe.batch.run_model.cluster745 - INFO - Child process started for cluster 745 with 177 probes
2026-06-08 22:24:29,807 - cnv_pipe.batch.run_model.cluster745 - INFO - Child process finished cluster 745. Wrote cluster_745_samples.csv and cluster_745_params.csv
2026-06-08 22:24:29,808 - cnv_pipe.batch.run_model - INFO - Cluster 745 finished in 52.67 seconds. Status: SUCCESS