cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_tissue --normal_sample reference-NA12878 --max_event_count 5 -v positive_somatic_control_2.tnseq.vcf.gz --contamination positive_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments positive_somatic_control_2.tnseq.segments --orientation_priors positive_somatic_control_2.tnseq.orientation_data.tsv positive_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:75000001, elapsed 0.0s, est remaining 0.9s, peak mem 415MB, user 0.1s, sys 1.8s, output queue size 115
progress 10% @chr2:140000001, elapsed 0.1s, est remaining 0.7s, peak mem 415MB, user 0.3s, sys 5.9s, output queue size 276
progress 15% @chr2:231000001, elapsed 0.1s, est remaining 0.7s, peak mem 415MB, user 0.4s, sys 9.5s, output queue size 128
progress 20% @chr4:14000001, elapsed 0.2s, est remaining 0.6s, peak mem 415MB, user 0.5s, sys 12.5s, output queue size 290
progress 25% @chr3:113000001, elapsed 0.2s, est remaining 0.6s, peak mem 415MB, user 0.6s, sys 16.6s, output queue size 450
progress 30% @chr5:165000001, elapsed 0.2s, est remaining 0.5s, peak mem 415MB, user 0.8s, sys 20.8s, output queue size 613
progress 35% @chr6:101000001, elapsed 0.3s, est remaining 0.5s, peak mem 415MB, user 1.0s, sys 24.3s, output queue size 773
progress 40% @chr7:98000001, elapsed 0.3s, est remaining 0.4s, peak mem 415MB, user 1.1s, sys 28.3s, output queue size 935
progress 45% @chr6:40000001, elapsed 0.3s, est remaining 0.4s, peak mem 415MB, user 1.3s, sys 32.5s, output queue size 1097
progress 50% @chr10:7000001, elapsed 0.4s, est remaining 0.4s, peak mem 415MB, user 1.4s, sys 36.3s, output queue size 1258
progress 55% @chr11:55000001, elapsed 0.4s, est remaining 0.3s, peak mem 415MB, user 1.5s, sys 40.3s, output queue size 1419
progress 60% @chr12:53000001, elapsed 0.4s, est remaining 0.3s, peak mem 415MB, user 1.7s, sys 44.1s, output queue size 1581
progress 65% @chr13:100000001, elapsed 0.4s, est remaining 0.2s, peak mem 415MB, user 2.0s, sys 47.7s, output queue size 1743
progress 70% @chr15:13000001, elapsed 0.5s, est remaining 0.2s, peak mem 415MB, user 2.1s, sys 51.6s, output queue size 1905
progress 75% @chr16:70000001, elapsed 0.5s, est remaining 0.2s, peak mem 415MB, user 2.2s, sys 55.7s, output queue size 2067
progress 80% @chr15:90000001, elapsed 0.5s, est remaining 0.1s, peak mem 415MB, user 2.4s, sys 59.4s, output queue size 2229
progress 85% @chr21:4000001, elapsed 0.6s, est remaining 0.1s, peak mem 415MB, user 2.7s, sys 63.1s, output queue size 2391
progress 90% @chrX:66000001, elapsed 0.6s, est remaining 0.1s, peak mem 415MB, user 3.0s, sys 67.1s, output queue size 2553
progress 95% @chr21:21000001, elapsed 0.6s, est remaining 0.0s, peak mem 415MB, user 3.3s, sys 70.5s, output queue size 2849
progress 100% @HLA-DRB1*03:01:01:01:1, elapsed 0.8s, est remaining 0.0s, peak mem 415MB, user 3.6s, sys 83.0s, output queue size 6138
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: 1f8bfbff fffab20b
  extended: f1bf07ab 1a407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8559C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 53230
output file size: 44181
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 561 calls 0.007 user 0.000 sys 0.017 real
"predict_filter": 187 calls 0.009 user 0.001 sys 0.022 real
advance: 3219322 calls 0.567 user 26.211 sys 29.499 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.001 user 0.002 sys 0.871 real
fetch_ref: 476 calls 0.010 user 0.021 sys 0.015 real
idle: 20057 calls 0.713 user 0.859 sys 366.232 real
init: 1 calls 0.279 user 0.193 sys 0.730 real
overall: 435998720 mem 5.499 user 87.744 sys 2.848 real