cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample HCC1395_BL --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_1.tnseq.vcf.gz --contamination negative_somatic_control_1.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_1.tnseq.segments --orientation_priors negative_somatic_control_1.tnseq.orientation_data.tsv negative_somatic_control_1.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:100000001, elapsed 0.1s, est remaining 1.6s, peak mem 804MB, user 0.2s, sys 2.3s, output queue size 144
progress 10% @chr3:105000001, elapsed 0.2s, est remaining 1.4s, peak mem 804MB, user 0.4s, sys 10.5s, output queue size 305
progress 15% @chr3:176000001, elapsed 0.2s, est remaining 1.3s, peak mem 804MB, user 0.7s, sys 18.2s, output queue size 467
progress 20% @chr5:22000001, elapsed 0.3s, est remaining 1.2s, peak mem 804MB, user 1.0s, sys 27.4s, output queue size 599
progress 25% @chr5:133000001, elapsed 0.4s, est remaining 1.1s, peak mem 804MB, user 1.1s, sys 38.6s, output queue size 713
progress 30% @chr6:69000001, elapsed 0.4s, est remaining 1.0s, peak mem 804MB, user 1.3s, sys 51.8s, output queue size 865
progress 35% @chr6:154000001, elapsed 0.5s, est remaining 0.9s, peak mem 804MB, user 1.6s, sys 61.4s, output queue size 994
progress 40% @chr8:21000001, elapsed 0.6s, est remaining 0.8s, peak mem 804MB, user 2.0s, sys 73.1s, output queue size 1156
progress 45% @chr9:125000001, elapsed 0.6s, est remaining 0.7s, peak mem 804MB, user 2.4s, sys 88.3s, output queue size 1317
progress 50% @chr10:99000001, elapsed 0.7s, est remaining 0.7s, peak mem 804MB, user 2.9s, sys 103.7s, output queue size 1479
progress 55% @chr12:117000001, elapsed 0.7s, est remaining 0.6s, peak mem 804MB, user 3.5s, sys 116.0s, output queue size 1617
progress 60% @chr13:48000001, elapsed 0.8s, est remaining 0.5s, peak mem 804MB, user 4.0s, sys 131.0s, output queue size 1779
progress 65% @chr14:74000001, elapsed 0.8s, est remaining 0.5s, peak mem 804MB, user 4.6s, sys 150.1s, output queue size 1940
progress 70% @chr16:53000001, elapsed 0.9s, est remaining 0.4s, peak mem 804MB, user 5.1s, sys 169.4s, output queue size 2097
progress 75% @chr14:19000001, elapsed 1.0s, est remaining 0.3s, peak mem 804MB, user 5.4s, sys 186.4s, output queue size 2258
progress 80% @chr17:75000001, elapsed 1.1s, est remaining 0.3s, peak mem 804MB, user 5.7s, sys 204.0s, output queue size 2420
progress 85% @chrX:88000001, elapsed 1.2s, est remaining 0.2s, peak mem 804MB, user 6.0s, sys 219.8s, output queue size 2586
progress 90% @chr4_KI270786v1_alt:1, elapsed 1.2s, est remaining 0.1s, peak mem 804MB, user 6.2s, sys 237.2s, output queue size 2890
progress 95% @chr16:39000001, elapsed 1.3s, est remaining 0.1s, peak mem 804MB, user 6.5s, sys 255.6s, output queue size 3373
progress 100% @HLA-C*16:02:01:1, elapsed 1.4s, est remaining 0.0s, peak mem 804MB, user 6.9s, sys 276.3s, output queue size 3986
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 384 max 384
algo: TNfilter
license: sentieon:TNhaplotyper=384
input file size: 46614
output file size: 40483
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 408 calls 0.000 user 0.000 sys 0.010 real
"predict_filter": 136 calls 0.014 user 0.000 sys 0.028 real
advance: 3219322 calls 0.758 user 119.494 sys 119.694 real
done: 1 calls 0.001 user 0.003 sys 0.004 real
execute: 1 calls 0.000 user 0.008 sys 1.539 real
fetch_ref: 384 calls 0.000 user 0.036 sys 0.035 real
idle: 20633 calls 0.634 user 0.526 sys 727.875 real
init: 1 calls 0.429 user 0.094 sys 0.705 real
overall: 843190272 mem 8.776 user 281.971 sys 3.554 real