[2026-06-08T22:17:16.547503Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:16.548514Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:16.548526Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:16.548530Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:16.548535Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXuQ4Hmp'
[2026-06-08T22:17:16.548539Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:16.548544Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:16.548547Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:16.548551Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T22:17:16.548555Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:16.548559Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:16.548562Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:16.548566Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:16.548570Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:16.549019Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:16.549086Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:16.555011Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:16.555821Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:16.556059Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:16.556425Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:16.556661Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.557040Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.557131Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.557204Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.557322Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.557391Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.557514Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.557579Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.557707Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.558055Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.558479Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.558571Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.558841Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.559588Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.560123Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.562160Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.562664Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:16.562752Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.563189Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.563361Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.563581Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.563696Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.563820Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.563889Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.564000Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.564066Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.564202Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.564277Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.564418Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.564646Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.565076Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.565151Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.565275Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.565338Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.565451Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.565516Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.565631Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.565695Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.565810Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.565877Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.565989Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.566066Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.566305Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.566881Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.566992Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.567055Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.567165Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.567281Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.567396Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.567480Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.567588Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.567652Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.567764Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.567826Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.568007Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.568125Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.568497Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.569127Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.569908Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.569998Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.570126Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.570196Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.570315Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.570383Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.570494Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.570565Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.570685Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.570747Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.571794Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.572344Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.572479Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.572548Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.572666Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.572735Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.574621Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.575035Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.575801Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.576531Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.576668Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.576743Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.576873Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.576950Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.577069Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.577132Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.577246Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.577315Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.577456Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.577622Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.578372Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.578449Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.578573Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.578644Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.578759Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.578825Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.578935Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.579002Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.579129Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.579200Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.595912Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.596790Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.596945Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.597466Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.597606Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.598585Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.599008Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.599191Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.599335Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.599733Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.600428Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.600751Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.601348Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:16.601759Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.602088Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:16.602825Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.603970Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.608426Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.610665Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0004] Task initiated on local node
[2026-06-08T22:17:16.611173Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0001] Task initiated on local node
[2026-06-08T22:17:16.613924Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.616631Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:17:16.617633Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:17:16.622269Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:17:16.625546Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:17:16.630240Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:17:16.631530Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0014] Task initiated on local node
[2026-06-08T22:17:16.695338Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.695535Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.695593Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.696881Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.697212Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.697519Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.698741Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.699027Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.705095Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:17:16.706449Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0010] Task initiated on local node
[2026-06-08T22:17:16.707178Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T22:17:16.707765Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.708020Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.711478Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-08T22:17:16.714316Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0009] Task initiated on local node
[2026-06-08T22:17:16.745201Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.746166Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.752088Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0003] Task initiated on local node
[2026-06-08T22:17:16.811397Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.812479Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.816960Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:17:17.279429Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.280414Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.283778Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:17:17.645780Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.646753Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.650416Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-08T22:17:17.711208Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.712313Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.715644Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:17:17.927308Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.928347Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.931367Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0014] Task initiated on local node
[2026-06-08T22:17:17.992941Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.994075Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.997529Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0012] Task initiated on local node
[2026-06-08T22:17:18.002334Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.003264Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.006410Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0001] Task initiated on local node
[2026-06-08T22:17:18.067533Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.068558Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.072281Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0009] Task initiated on local node
[2026-06-08T22:17:18.133398Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.134512Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.137944Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0004] Task initiated on local node
[2026-06-08T22:17:19.352610Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.354168Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.357268Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:17:19.418505Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.419893Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.423390Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0013] Task initiated on local node
[2026-06-08T22:17:19.484500Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.485994Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.489447Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-08T22:17:19.550425Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.551775Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.555259Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0015] Task initiated on local node
[2026-06-08T22:17:19.616169Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.617457Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.620834Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0002] Task initiated on local node
[2026-06-08T22:17:19.832198Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.833500Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.837525Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0001] Task initiated on local node
[2026-06-08T22:17:19.898423Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.898513Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.899754Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.900374Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.904353Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0012] Task initiated on local node
[2026-06-08T22:17:19.905470Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:17:19.965439Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.966733Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.970267Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0003] Task initiated on local node
[2026-06-08T22:17:19.983232Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.984506Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.987390Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0004] Task initiated on local node
[2026-06-08T22:17:20.048701Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.050063Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.053707Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0016] Task initiated on local node
[2026-06-08T22:17:20.615755Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.617218Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.620232Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-08T22:17:20.681491Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.682849Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.687292Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:17:20.748190Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.749466Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.753043Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T22:17:20.765931Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.767089Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.770566Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:17:20.783283Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.784449Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.787803Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0011] Task initiated on local node
[2026-06-08T22:17:20.848951Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.850067Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.854663Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:17:20.883267Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.884598Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.888349Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T22:17:20.949470Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.950589Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.954341Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0006] Task initiated on local node
[2026-06-08T22:17:21.466700Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.467919Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.471306Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:17:21.532420Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.533734Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.537676Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-08T22:17:21.598352Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.599598Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.603312Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0001] Task initiated on local node
[2026-06-08T22:17:21.664110Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.665335Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.668624Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0010] Task initiated on local node
[2026-06-08T22:17:21.729829Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.730929Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.734054Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0000] Task initiated on local node
[2026-06-08T22:17:21.795315Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.796455Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.800301Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-08T22:17:21.828989Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.830065Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.834014Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-08T22:17:21.838459Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.839223Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.842808Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:17:21.871617Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.872505Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.875732Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0013] Task initiated on local node
[2026-06-08T22:17:21.876395Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.877024Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.880718Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0002] Task initiated on local node
[2026-06-08T22:17:21.893557Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.894439Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.897560Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0001] Task initiated on local node
[2026-06-08T22:17:21.926839Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.927688Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.931088Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:17:21.931767Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.932431Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.936393Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_021_chr22_0000] Task initiated on local node
[2026-06-08T22:17:21.997333Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.998197Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.001228Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0000] Task initiated on local node
[2026-06-08T22:17:22.062769Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.063705Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.067081Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0004] Task initiated on local node
[2026-06-08T22:17:22.127956Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.128803Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.133366Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:17:22.194126Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.194231Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.195014Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.195485Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.199143Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:17:22.200299Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-08T22:17:22.260418Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.260519Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.260546Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.261294Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.261756Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.262409Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.268709Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0003] Task initiated on local node
[2026-06-08T22:17:22.269099Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0016] Task initiated on local node
[2026-06-08T22:17:22.269639Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-08T22:17:22.329239Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.329334Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.329360Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.330116Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.330511Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.330792Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.335054Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0006] Task initiated on local node
[2026-06-08T22:17:22.336251Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0005] Task initiated on local node
[2026-06-08T22:17:22.337537Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:17:22.395772Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.395866Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.396602Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.396992Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.400886Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-08T22:17:22.402045Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0007] Task initiated on local node
[2026-06-08T22:17:22.430062Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.430814Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.433739Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-08T22:17:22.495194Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.495924Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.499199Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T22:17:22.761003Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.761793Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.764198Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.764980Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.765234Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0003] Task initiated on local node
[2026-06-08T22:17:22.767698Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0007] Task initiated on local node
[2026-06-08T22:17:22.797379Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.797449Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.798051Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.798375Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.801248Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-08T22:17:22.802378Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:17:22.862782Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.863492Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.866678Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:17:22.978565Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.979306Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.982089Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-08T22:17:23.043695Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.043792Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.044472Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.044898Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.048042Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0011] Task initiated on local node
[2026-06-08T22:17:23.049290Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:17:23.078405Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.079056Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.081642Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-08T22:17:23.111129Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.112143Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.112441Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.114807Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.115605Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:17:23.117899Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_021_chr22_0002] Task initiated on local node
[2026-06-08T22:17:23.179342Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_021_chr22_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.179436Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.180030Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.180421Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.183929Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-08T22:17:23.184938Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:17:23.245206Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.245863Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.249072Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_002_chr3_0008] Task initiated on local node
[2026-06-08T22:17:23.461031Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.461720Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.465780Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0015] Task initiated on local node
[2026-06-08T22:17:23.526734Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.527408Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.530550Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:17:23.559496Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.560103Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.562847Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0005] Task initiated on local node
[2026-06-08T22:17:23.564006Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.564575Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.568466Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0002] Task initiated on local node
[2026-06-08T22:17:23.596642Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.597247Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.600534Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:17:23.601395Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.665454Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.665925Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.668865Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-08T22:17:23.730239Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.995167Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.995641Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.998570Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:17:24.060005Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.060081Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.060613Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.063394Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:17:24.124787Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.125302Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.127984Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0000] Task initiated on local node
[2026-06-08T22:17:24.189564Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.303770Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.304271Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.306894Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_002_chr3_0008] Task initiated on local node
[2026-06-08T22:17:24.368288Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_002_chr3_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.683400Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.683473Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.684013Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.684432Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.687372Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0002] Task initiated on local node
[2026-06-08T22:17:24.688444Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:17:24.716744Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.717601Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.536620Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.537176Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.539899Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_020_chr21_0003] Task initiated on local node
[2026-06-08T22:17:31.569063Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_020_chr21_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.569329Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.569465Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.569760Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.570425Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.575139Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:31.576297Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:31.577517Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:31.603197Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.603269Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.603488Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.603885Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.607122Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:31.607793Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:31.608913Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.640614Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.640683Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.640852Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.643587Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:31.673074Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:35.546889Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:49.667955Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:49.667955Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] 
[2026-06-08T22:17:49.667955Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:49.668018Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] 
[2026-06-08T22:17:49.668026Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:49.668034Z] [nf-85c76eecb6c1963e9a95360c5c04efb5-d342f-cnft5] [597_1] [WorkflowRunner] Elapsed time for full workflow: 33 sec