File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/7c55fec2b1811b4f464e696f67163f/.command.err
Size
1.2 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-mvj0j80d because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:19:14,084 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:19:14,976 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:19:15,146 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:19:16,100 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:19:16,294 - cnv_pipe.batch.run_model - INFO - Processing cluster 42 with 196 probes
2026-06-08 22:19:16,667 - cnv_pipe.batch.run_model.cluster42 - INFO - Child process started for cluster 42 with 196 probes
2026-06-08 22:20:17,934 - cnv_pipe.batch.run_model.cluster42 - INFO - Child process finished cluster 42. Wrote cluster_42_samples.csv and cluster_42_params.csv
2026-06-08 22:20:17,935 - cnv_pipe.batch.run_model - INFO - Cluster 42 finished in 61.64 seconds. Status: SUCCESS