[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXDt87UH/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXDt87UH/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXDt87UH/chr19_15162349-15162662.bed.gz.tbi
[2026-06-08T22:17:23.152278Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:23.153247Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:23.153276Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:23.153283Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:23.153288Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXDt87UH'
[2026-06-08T22:17:23.153293Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:23.153299Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:23.153303Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:23.153307Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:17:23.153310Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:23.153314Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:23.153317Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:23.153321Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:23.153325Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:23.154278Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:23.154350Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:23.160277Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:23.160929Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:23.161136Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:23.161693Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:23.161996Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.162535Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.162938Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.163233Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.163867Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.164035Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.164375Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.164770Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.165277Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.165819Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.165892Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.166238Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.168463Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.168875Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:23.169641Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.169948Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.170546Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.170616Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.170759Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.170898Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.171125Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.171196Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.171310Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.171378Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.171501Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.171659Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.171865Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.172100Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.172225Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.172769Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.172904Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.173286Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.174030Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.174657Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.175168Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.175236Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.175349Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.175414Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.175531Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.175596Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.175708Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.175771Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.175881Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.175943Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.177875Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.178043Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.178190Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.178647Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.179202Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.179277Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.179396Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.179462Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.179577Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.179642Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.179761Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.179821Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.179938Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.180004Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.180111Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.180348Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.181020Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.181091Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.181207Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.181272Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.181381Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.181448Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.193960Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.194061Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.194131Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.194319Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.194389Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.194481Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.194548Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.194654Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.196186Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.196286Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:23.199508Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.200400Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.201078Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.202040Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.204527Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.205103Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:17:23.205463Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.205875Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.206990Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.208315Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.212164Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:17:23.216798Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:17:23.217720Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:17:23.224414Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:17:23.225470Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:17:23.228783Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:17:23.344593Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:17:23.378267Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.378390Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.379321Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.379921Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.383811Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:17:23.384657Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:17:24.500361Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.501274Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.505115Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:17:24.766801Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.767793Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.771678Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:17:24.833670Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.834632Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.838411Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:17:24.899403Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.900383Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.903745Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:17:24.965158Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.965272Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.966164Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.966846Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.970454Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.970933Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:17:24.973234Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.975029Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:17:24.976207Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:17:25.005908Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.006833Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.010286Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:17:25.039372Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.039472Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.040273Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.041023Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.043748Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:17:25.046443Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:17:25.107800Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.108705Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.112119Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:17:25.323952Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.324844Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.328349Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:17:25.329131Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.329829Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.332907Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:17:25.394712Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.394830Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.395616Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.396363Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.399869Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:17:25.401256Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:17:25.461194Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.462096Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.465571Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:17:25.526944Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.527917Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.531327Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:17:25.793189Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.794018Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.798581Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:17:26.160437Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.161210Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.164594Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:17:26.225911Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.226016Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.226787Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.227118Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.230994Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:17:26.232124Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:17:26.294028Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.294825Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.298379Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:17:26.328526Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.329260Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.332317Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:17:26.345501Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.346170Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.349218Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:17:26.378450Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.379183Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.382006Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:17:26.443616Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.444381Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.448146Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:17:26.709546Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.710344Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.713610Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:17:26.775134Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.775241Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.775278Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.775958Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.776484Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.776886Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.780238Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:17:26.781874Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:17:26.783457Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:17:26.843267Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.843386Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.844043Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.844824Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.848325Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:17:26.849197Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:17:26.911407Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.911509Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.912170Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.913034Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.916526Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:17:26.917658Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:17:26.979451Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.979561Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.980206Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.980586Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.984050Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:17:26.985275Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:17:27.045240Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.045931Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.049212Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:17:27.210670Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.211427Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.214754Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:17:27.275881Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.276606Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.279815Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:17:27.441450Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.442157Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.445622Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:17:27.506778Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.507547Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.511020Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:17:27.772864Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.773572Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.776756Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:17:27.837889Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.838598Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.842232Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:17:28.154396Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.155054Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.158868Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:17:28.188725Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.189326Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.192349Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:17:28.194413Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.194893Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.197892Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:17:28.203024Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.203512Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.206894Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:17:28.235880Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.236463Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.239588Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:17:28.244466Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.276551Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.541389Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.541988Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.545847Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:17:28.606670Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.122094Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.122592Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.126648Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:17:29.187623Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.502736Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.503296Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.506328Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:17:29.567811Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.568334Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.571567Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:17:29.632785Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.746981Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.747133Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.747543Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.748185Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.751524Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:17:29.752586Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:17:29.812581Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.812671Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.129405Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.129888Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.132888Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:17:31.194145Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.194395Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.194528Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.195143Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.197014Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.197521Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:31.200228Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:31.201175Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:31.231157Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.231229Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.231254Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.231452Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.232073Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.234579Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:31.235744Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:31.264066Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.264156Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.264342Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.266635Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:31.296502Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.766094Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:42.042437Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:42.042437Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] 
[2026-06-08T22:17:42.042437Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:42.042496Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] 
[2026-06-08T22:17:42.042504Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:42.042511Z] [nf-cf72960e81a4751623ba2a19b5fa342f-bad21-qm52k] [646_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec