Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/e8a5ae76520394521b78fe49518e8f/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/ded0dc28f0bedef0afd0b3c848896c/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/ded0dc28f0bedef0afd0b3c848896c/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/e8a5ae76520394521b78fe49518e8f/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:17:23.026452Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:23.027693Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:23.027729Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:23.027735Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:23.027740Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXnyGRhH'
[2026-06-08T22:17:23.027744Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:23.027749Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:23.027753Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:23.027757Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:17:23.027760Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:23.027764Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:23.027768Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:23.027771Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:23.027775Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:23.028803Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:23.028867Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:23.034912Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:23.035510Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:23.035963Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:23.036125Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:23.036345Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.036972Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.037067Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.037140Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.037266Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.037336Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.037610Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.037886Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.038064Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.038268Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.038345Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.038624Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.038945Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.039143Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.039357Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.039471Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.039535Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.039798Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.039903Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.042316Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.043310Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.043707Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:23.044331Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.044448Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.044727Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.045367Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.045792Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.045858Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.046023Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.046091Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.046203Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.046268Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.046426Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.046628Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.046998Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.047423Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.047879Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.047944Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.048060Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.048126Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.048235Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.048297Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.048410Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.048473Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.048578Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.048638Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.048748Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.048814Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.049285Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.049956Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.050191Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.050275Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.050404Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.050476Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.050714Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.051282Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.051491Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.051571Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.051689Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.051754Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.051868Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.051929Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.052048Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.052111Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.065756Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.065861Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.065929Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.066087Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.066157Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.066244Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.066307Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.066414Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.066480Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.066526Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:23.076275Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.076902Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.079780Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.080564Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.081063Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:17:23.081552Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.085219Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:17:23.086187Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.086922Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:17:23.087136Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.087856Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.090724Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:17:23.092804Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.094696Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:17:23.100166Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:17:23.101632Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:17:23.103366Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:17:23.211176Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.211271Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.211300Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.212016Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.212300Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.212544Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.218898Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:17:23.219221Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:17:23.277248Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.278028Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.284421Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:17:23.395920Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.396753Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.400144Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:17:23.461437Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.462237Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.465533Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:17:23.678286Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.678396Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.679137Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.681222Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.683738Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:17:23.684760Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-08T22:17:23.746652Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.746753Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.747513Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.748166Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.751979Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-08T22:17:23.753453Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:17:23.815378Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.816158Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.819400Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:17:23.930825Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.931649Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.934895Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:17:23.959319Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:17:23.964017Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.964747Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.968333Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:17:23.997406Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.998129Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.001124Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:17:24.213212Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.213952Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.217600Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-08T22:17:24.218249Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.218849Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.221971Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:17:24.251212Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.251949Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.256008Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:17:24.268495Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.269256Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.272880Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:17:24.333710Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.333813Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.334510Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.335084Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.338969Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:17:24.340199Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:17:24.401855Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.402594Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.406024Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:17:24.410898Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.411513Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.414412Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:17:24.776972Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.777764Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.781097Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:17:24.942662Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.943422Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.946881Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:17:25.007961Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.008587Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.011882Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:17:25.525179Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.525862Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.529410Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:17:25.590431Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.591165Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.594342Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-08T22:17:25.623473Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.624156Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.626811Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-08T22:17:25.629095Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.629669Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.632705Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:17:25.694077Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.694195Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.694790Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.696885Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.699192Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:17:25.700397Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-08T22:17:25.762276Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.762384Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.762993Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.763707Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.767845Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:17:25.768736Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:17:25.779839Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.780402Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.783450Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-08T22:17:25.812526Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.813164Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.816850Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-08T22:17:25.821500Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.822116Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.825365Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-08T22:17:25.838402Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.838987Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.842259Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-08T22:17:25.855310Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.855879Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.859781Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:17:25.860499Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.861080Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.864884Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-08T22:17:25.869221Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.869746Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.873716Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-08T22:17:25.885941Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.886496Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.889636Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-08T22:17:25.902932Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.903453Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.907636Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.908383Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-08T22:17:25.909131Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.912118Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:17:25.917342Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.917821Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.921161Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:17:25.925924Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.926426Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.930511Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-08T22:17:25.943145Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.943699Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.946942Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:17:25.959863Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.959951Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.960398Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.961178Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.964932Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:17:25.966300Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-08T22:17:25.966912Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.967433Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.971082Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:17:25.999768Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.000370Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.003019Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.004616Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:17:26.011181Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.043348Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.207744Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.208258Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.211576Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-08T22:17:26.272663Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.838195Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.838275Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.838697Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.838977Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.842594Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:17:26.843627Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-08T22:17:26.871324Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.871821Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.875045Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:17:26.880082Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.880861Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.944927Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.409981Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.410493Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.413633Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-08T22:17:27.474871Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.475157Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.475316Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.476247Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.478728Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.479258Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:27.482080Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:27.482838Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:27.543356Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.543449Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.543476Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.543721Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.544378Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.548100Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:27.548938Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:27.578239Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.579662Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.579891Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.582815Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:27.612389Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.678699Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:33.564609Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:33.564609Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] 
[2026-06-08T22:17:33.564609Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:33.564667Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] 
[2026-06-08T22:17:33.564675Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:33.564681Z] [nf-6ce8a5ae76520394521b78fe49518e8f-04492-dfgrr] [611_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec