Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/094745cfb40e43a438e3481e03fadd/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/ded0dc28f0bedef0afd0b3c848896c/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/ded0dc28f0bedef0afd0b3c848896c/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/094745cfb40e43a438e3481e03fadd/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr6_138229684-138229952.bed.gz
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXpjhj59/chr6_138229684-138229952.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXpjhj59/chr6_138229684-138229952.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXpjhj59/chr6_138229684-138229952.bed.gz.tbi
[2026-06-08T22:17:17.482685Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:17.483761Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:17.483800Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:17.483806Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:17.483811Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXpjhj59'
[2026-06-08T22:17:17.483815Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:17.483820Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:17.483824Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:17.483828Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:17:17.483832Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:17.483835Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:17.483839Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:17.483842Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:17.483846Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:17.484609Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:17.484708Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:17.490712Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:17.491293Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:17.491510Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:17.491749Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:17.491979Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.492526Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.492620Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.492701Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.492826Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.492895Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.493016Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.493431Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.493548Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.494172Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.496434Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.496921Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.497106Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:17.497282Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.497409Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.497476Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.497588Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.497654Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.497767Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.497830Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.498013Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.498081Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.498191Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.498380Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.498659Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.498723Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.498834Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.498898Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.499016Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.499081Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.499189Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.499282Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.499401Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.499464Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.499574Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.499776Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.500119Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.500186Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.500294Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.500388Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.500502Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.500565Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.500671Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.500737Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.500843Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.500904Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.501020Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.501222Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.501648Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.501716Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.501826Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.501889Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.501998Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.502063Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.502238Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.502306Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.502421Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.502484Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.502594Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.502668Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.503175Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.503928Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.504263Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.504359Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.504508Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.504688Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.505306Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.505403Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.505573Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.505667Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.505829Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.505918Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.506065Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.506149Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.507886Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.508083Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.508762Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.508866Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.509030Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.509121Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.509277Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.509364Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.509516Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.509597Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.509809Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.509978Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.510700Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.510801Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.510946Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.511029Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.511179Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.511266Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.511412Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.511496Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.511715Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.512390Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.512641Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.512734Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.512903Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.513001Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.513245Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.513341Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.513636Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.514287Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.514403Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.514471Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.514575Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.514641Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.514752Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.514817Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.517089Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.517807Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.518079Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.518147Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.530832Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.531515Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.531592Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.531760Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.532694Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.532962Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.533165Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.533559Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.533987Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.534937Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.536704Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.537483Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T22:17:17.538317Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.538784Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.541101Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.541878Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.542392Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T22:17:17.542866Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:17.542993Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.543291Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:17.544031Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.548966Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0006] Task initiated on local node
[2026-06-08T22:17:17.558732Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0005] Task initiated on local node
[2026-06-08T22:17:17.567283Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0010] Task initiated on local node
[2026-06-08T22:17:17.567872Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T22:17:17.568069Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0005] Task initiated on local node
[2026-06-08T22:17:17.568864Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T22:17:17.682582Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.683914Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.683979Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.685000Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.688355Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.688848Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.694170Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T22:17:17.696923Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0003] Task initiated on local node
[2026-06-08T22:17:17.697959Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0009] Task initiated on local node
[2026-06-08T22:17:17.807136Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.808321Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.812755Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:17:18.325476Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.326685Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.330201Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:17:18.591802Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.592964Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.596929Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0004] Task initiated on local node
[2026-06-08T22:17:18.657666Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.658806Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.662491Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0000] Task initiated on local node
[2026-06-08T22:17:18.823579Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.824793Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.829236Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0002] Task initiated on local node
[2026-06-08T22:17:18.940332Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.941545Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.944926Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0007] Task initiated on local node
[2026-06-08T22:17:19.056323Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.057530Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.060585Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T22:17:19.121755Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.122947Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.126549Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0005] Task initiated on local node
[2026-06-08T22:17:19.188096Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.189266Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.192795Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T22:17:19.254086Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.255237Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.259189Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:17:19.420131Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.421300Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.425689Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T22:17:19.486076Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.487282Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.490880Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-08T22:17:19.491415Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.492465Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.495723Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-08T22:17:19.557650Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.557779Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.559140Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.559820Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.563436Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-08T22:17:19.565615Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0003] Task initiated on local node
[2026-06-08T22:17:19.626636Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.626755Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.626794Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.628028Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.628597Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.631988Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.632401Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T22:17:19.636280Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0008] Task initiated on local node
[2026-06-08T22:17:19.637873Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T22:17:19.699340Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.699472Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.700636Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.701358Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.704815Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-08T22:17:19.705999Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-08T22:17:19.769332Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.769448Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.770504Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.771063Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.776282Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-08T22:17:19.777736Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:17:19.886638Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.887915Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:19.891894Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0006] Task initiated on local node
[2026-06-08T22:17:20.003330Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.004611Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.007981Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0004] Task initiated on local node
[2026-06-08T22:17:20.071041Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.072278Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.076064Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0012] Task initiated on local node
[2026-06-08T22:17:20.187356Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.188635Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.191933Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0000] Task initiated on local node
[2026-06-08T22:17:20.253635Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.254913Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.258877Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0001] Task initiated on local node
[2026-06-08T22:17:20.470492Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.471598Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.475480Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0007] Task initiated on local node
[2026-06-08T22:17:20.536579Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.537673Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.542018Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0002] Task initiated on local node
[2026-06-08T22:17:20.803576Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.804838Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.808524Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0002] Task initiated on local node
[2026-06-08T22:17:20.869628Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.870915Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.874658Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T22:17:20.986180Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.987460Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.991143Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-08T22:17:21.052451Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.052572Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.053782Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.054406Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.058716Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-08T22:17:21.059904Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:17:21.121243Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.121354Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.122457Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.122924Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.126892Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-08T22:17:21.127772Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0011] Task initiated on local node
[2026-06-08T22:17:21.189068Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.190266Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.193935Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:17:21.505643Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.506866Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.510640Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0007] Task initiated on local node
[2026-06-08T22:17:21.571659Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.572865Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.576866Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0008] Task initiated on local node
[2026-06-08T22:17:21.639031Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.640068Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.643867Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0012] Task initiated on local node
[2026-06-08T22:17:21.755307Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.756464Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.760299Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0001] Task initiated on local node
[2026-06-08T22:17:21.821276Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.822455Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.826303Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:17:21.987801Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.988988Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.992448Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0012] Task initiated on local node
[2026-06-08T22:17:22.053618Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.054809Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.058336Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0009] Task initiated on local node
[2026-06-08T22:17:22.087442Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.088521Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.092861Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-08T22:17:22.153346Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.153473Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.154566Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.155218Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.159508Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0010] Task initiated on local node
[2026-06-08T22:17:22.160984Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0002] Task initiated on local node
[2026-06-08T22:17:22.222638Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.222723Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.223688Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.224368Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.228095Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-08T22:17:22.229347Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0009] Task initiated on local node
[2026-06-08T22:17:22.290560Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.290691Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.291701Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.292529Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.296624Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-08T22:17:22.297753Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:17:22.358842Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.358960Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.359010Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.360158Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.360742Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.361307Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.364837Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-08T22:17:22.366420Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-08T22:17:22.367668Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0013] Task initiated on local node
[2026-06-08T22:17:22.393610Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.394812Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.398227Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-08T22:17:22.402779Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.402881Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.404063Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.404527Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.408556Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0004] Task initiated on local node
[2026-06-08T22:17:22.438107Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.438218Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.439346Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.439816Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.443488Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-08T22:17:22.444808Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0003] Task initiated on local node
[2026-06-08T22:17:22.504527Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.505887Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.509497Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-08T22:17:22.571018Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.572032Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.575773Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:17:22.987799Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.988837Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.992682Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0006] Task initiated on local node
[2026-06-08T22:17:23.054595Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.055590Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.059315Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0005] Task initiated on local node
[2026-06-08T22:17:23.120280Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.121217Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.124791Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-08T22:17:23.185443Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.186487Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.190647Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:17:23.301154Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.302361Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.306179Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0009] Task initiated on local node
[2026-06-08T22:17:23.315339Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-08T22:17:23.318681Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.318749Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.319669Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.320067Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.323384Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:17:23.324489Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0004] Task initiated on local node
[2026-06-08T22:17:23.352054Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.352860Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.356385Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0007] Task initiated on local node
[2026-06-08T22:17:23.356993Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.357655Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.360914Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0000] Task initiated on local node
[2026-06-08T22:17:23.389924Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.390875Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.394600Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T22:17:23.455425Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.456312Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.460141Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0011] Task initiated on local node
[2026-06-08T22:17:23.522193Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.523052Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.526668Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0006] Task initiated on local node
[2026-06-08T22:17:23.589053Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.589941Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.593972Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000] Task initiated on local node
[2026-06-08T22:17:23.655018Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_444_chr6_GL000254v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.655930Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.660370Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0010] Task initiated on local node
[2026-06-08T22:17:23.871088Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.871205Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.872033Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.872752Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.876903Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_006_chr7_0008] Task initiated on local node
[2026-06-08T22:17:23.878107Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T22:17:24.038793Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.039684Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.043171Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-08T22:17:24.104108Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.104204Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.104887Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.105826Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.109648Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T22:17:24.110734Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-08T22:17:24.221562Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.221672Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.222364Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.223063Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.226321Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000] Task initiated on local node
[2026-06-08T22:17:24.227327Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-08T22:17:24.289214Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_398_chr6_GL000251v2_alt_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.289313Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.289989Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.290573Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.294455Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0003] Task initiated on local node
[2026-06-08T22:17:24.295252Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:17:24.355244Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.355355Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.356013Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.356767Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.360074Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-08T22:17:24.393900Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-08T22:17:24.421320Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.421409Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.422051Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.422667Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.426658Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0012] Task initiated on local node
[2026-06-08T22:17:24.427465Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T22:17:24.457135Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.457776Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.460764Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0011] Task initiated on local node
[2026-06-08T22:17:24.490224Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.490883Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.494306Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T22:17:24.605536Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.606290Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.609787Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-08T22:17:24.671011Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.671752Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.675718Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-08T22:17:24.736578Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.736686Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.737330Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.737900Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.741674Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-08T22:17:24.743105Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_007_chr8_0001] Task initiated on local node
[2026-06-08T22:17:24.803171Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.804023Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.807366Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0013] Task initiated on local node
[2026-06-08T22:17:24.868517Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.900768Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.901373Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.905243Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0000] Task initiated on local node
[2026-06-08T22:17:24.918181Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.918751Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.921850Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0010] Task initiated on local node
[2026-06-08T22:17:24.950767Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.954544Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.419606Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.420239Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.423480Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-08T22:17:25.484821Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.598971Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.599433Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.602672Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0011] Task initiated on local node
[2026-06-08T22:17:25.663679Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.827925Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.828382Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.831081Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-08T22:17:25.861442Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.893404Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.893810Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.896406Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_006_chr7_0008] Task initiated on local node
[2026-06-08T22:17:25.925865Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_006_chr7_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.957733Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.958140Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.960557Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_007_chr8_0001] Task initiated on local node
[2026-06-08T22:17:25.990181Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_007_chr8_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.990474Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.990592Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.991315Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.991796Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.995926Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:25.996469Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:25.996842Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:26.025194Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.025259Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.025284Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.025470Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.026049Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.028799Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:26.029684Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:26.059451Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.059516Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.059686Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.062038Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:26.091763Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.109232Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:36.372660Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:36.372660Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] 
[2026-06-08T22:17:36.372660Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:36.372748Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] 
[2026-06-08T22:17:36.372756Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:36.372764Z] [nf-65094745cfb40e43a438e3481e03fadd-61c25-8lpnv] [626_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec