Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/1e048d94bbc98f44884bc9c94b54e4/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/fcea1fb81584c536e4ce18be19ca61/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/1e048d94bbc98f44884bc9c94b54e4/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/fcea1fb81584c536e4ce18be19ca61/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:17:27.763059Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:27.765356Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:27.765375Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:27.765379Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:27.765384Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAmEWD5'
[2026-06-08T22:17:27.765388Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:27.765392Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:27.765396Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:27.765399Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T22:17:27.765403Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:27.765407Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:27.765411Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:27.765414Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:27.765418Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:27.766148Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:27.766267Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:27.771913Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:27.772906Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:27.773151Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:27.773428Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:27.773713Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.774009Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.774103Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.774176Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.774299Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.774368Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.774491Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.774554Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.774673Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.774768Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.775056Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.775499Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.775679Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.775905Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.775991Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.776130Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.776265Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.776689Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.777162Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.777468Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.777676Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.779641Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:27.779898Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.780282Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.780407Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.780474Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.780600Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.780665Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.780776Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.780844Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.780953Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.781021Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.781140Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.781202Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.781571Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.781892Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.782008Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.782073Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.782188Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.782252Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.782361Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.782421Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.782530Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.782594Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.783160Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.783357Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.783937Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.784361Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.784543Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.784615Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.784721Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.784788Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.784896Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.784959Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.785069Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.785130Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.785245Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.785310Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.785529Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.786035Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.786151Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.786213Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.786324Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.786387Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.786495Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.786563Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.786673Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.786734Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.801522Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.802017Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.802094Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.802251Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.802320Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.802405Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.802475Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.803938Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.804500Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:27.804563Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:27.809481Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.810061Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.810412Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.812073Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.812842Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.813237Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:17:27.813789Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.814689Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.815594Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.816954Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.822752Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T22:17:27.825194Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T22:17:27.827239Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T22:17:27.829220Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:17:27.833148Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T22:17:27.834469Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T22:17:27.835611Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:17:27.883819Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.884731Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.891462Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:17:27.917558Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.918527Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.922491Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T22:17:27.983314Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.984122Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.988268Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T22:17:28.399901Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.400727Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.404283Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T22:17:29.066570Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.067246Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.070775Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:17:29.131608Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.131684Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.132385Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.132697Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.136359Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T22:17:29.137955Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T22:17:29.197354Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.198103Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.201178Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:17:29.362697Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.363463Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.367166Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:17:29.829142Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.829919Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.832843Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:17:29.893978Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.894057Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.894665Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.895079Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.898588Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:17:29.927209Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.927268Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.927858Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.928212Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.931445Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T22:17:29.932487Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.932817Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T22:17:29.933450Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.936080Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T22:17:29.937344Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.937995Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.940586Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T22:17:29.969827Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.969892Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.969915Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.970483Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.970806Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.972850Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.974320Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:17:29.976231Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:17:29.977363Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T22:17:29.978111Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.978669Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.981413Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:17:30.010573Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.010635Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.010655Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.010677Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.011192Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.011505Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.013018Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.014164Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T22:17:30.014477Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.016976Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:17:30.019452Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T22:17:30.020676Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T22:17:30.048540Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.048623Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.049142Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.049544Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.052613Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T22:17:30.054167Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T22:17:30.081775Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.082325Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.085287Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:17:30.196644Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.197268Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.200405Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:17:30.229336Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.229911Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.232711Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T22:17:30.795008Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.795571Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.798416Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T22:17:30.827580Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.828121Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.830937Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T22:17:31.192969Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.193553Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.196396Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:17:31.257620Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.258163Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.261029Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:17:31.290109Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.290663Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.293371Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:17:31.498435Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T22:17:31.504993Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.505063Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.505536Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.506040Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.509200Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:17:31.510320Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:17:31.538380Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.538873Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.541795Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T22:17:31.653287Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.653900Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.656640Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T22:17:31.717903Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.718431Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.720913Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T22:17:31.726081Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.726586Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.729722Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T22:17:31.758407Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.759246Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.759523Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.761762Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.763453Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:17:31.765836Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T22:17:31.794212Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.794759Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.797866Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T22:17:31.826885Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.826961Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.827403Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.827705Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.830577Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:17:31.831891Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T22:17:31.891626Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.891713Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.892136Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.892484Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.895613Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:17:31.896884Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T22:17:31.924541Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.925001Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.927235Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T22:17:31.957000Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.957456Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.959997Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T22:17:32.121707Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.122190Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.125221Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:17:32.154080Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.154519Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.157109Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T22:17:32.186456Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.902410Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.902844Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.906300Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T22:17:32.935025Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.967024Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.967406Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.970047Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:17:32.999283Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:32.999679Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.002282Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T22:17:33.015475Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.015886Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.018179Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:17:33.031655Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.063459Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.227721Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.228085Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.231120Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:17:33.260112Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.374135Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.374194Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.374507Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.374929Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.377711Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T22:17:33.378701Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T22:17:33.407735Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.407796Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.521956Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.522293Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.525143Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T22:17:33.554456Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.554688Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.554806Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.555116Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.555839Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.559072Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:33.560216Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:33.561181Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:33.588575Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.588640Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.588661Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.588836Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.589191Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.591913Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:33.592582Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:33.621862Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.621924Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.622089Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:33.624766Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:33.654113Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:38.330195Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:46.653942Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:46.653942Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] 
[2026-06-08T22:17:46.653942Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:46.653993Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] 
[2026-06-08T22:17:46.654000Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:46.654006Z] [nf-edfcea1fb81584c536e4ce18be19ca61-41d29-t62nx] [608_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec