Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/02be44bdb567d668b68930eb114a44/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/02be44bdb567d668b68930eb114a44/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/d1e96bfdd243f35cecbdbd35c5ccc5/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/02be44bdb567d668b68930eb114a44/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/b858c3aaaac918c6ebe53926557ead/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/b858c3aaaac918c6ebe53926557ead/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-z3ziyhwf because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:21:41,041 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:21:41,939 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:21:42,115 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:21:43,108 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:21:43,187 - cnv_pipe.batch.run_model - INFO - Processing cluster 916 with 184 probes
2026-06-08 22:21:43,681 - cnv_pipe.batch.run_model.cluster916 - INFO - Child process started for cluster 916 with 184 probes
2026-06-08 22:22:41,037 - cnv_pipe.batch.run_model.cluster916 - INFO - Child process finished cluster 916. Wrote cluster_916_samples.csv and cluster_916_params.csv
2026-06-08 22:22:41,039 - cnv_pipe.batch.run_model - INFO - Cluster 916 finished in 57.85 seconds. Status: SUCCESS