File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b1/df89a4545c86e73eda4391db30fef7/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-o5yjjede because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:22:52,126 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:22:52,938 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:22:53,118 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:22:54,282 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:22:54,358 - cnv_pipe.batch.run_model - INFO - Processing cluster 670 with 151 probes
2026-06-08 22:22:54,745 - cnv_pipe.batch.run_model.cluster670 - INFO - Child process started for cluster 670 with 151 probes
2026-06-08 22:23:41,936 - cnv_pipe.batch.run_model.cluster670 - INFO - Child process finished cluster 670. Wrote cluster_670_samples.csv and cluster_670_params.csv
2026-06-08 22:23:41,937 - cnv_pipe.batch.run_model - INFO - Cluster 670 finished in 47.58 seconds. Status: SUCCESS