Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/65e8388c5c8fea46c9e9b0bf1a959c/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/a954511b40e76d107ffbd247f3a138/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/a954511b40e76d107ffbd247f3a138/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/65e8388c5c8fea46c9e9b0bf1a959c/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-08T22:17:14.999073Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:15.019093Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:15.019125Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:15.019132Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:15.019137Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXgfFcw5'
[2026-06-08T22:17:15.019141Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:15.019146Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:15.019150Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:15.019153Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] [RunParameters] memMb: 3047507
[2026-06-08T22:17:15.019157Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:15.019161Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:15.019164Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:15.019168Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:15.019172Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:15.019914Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:15.020027Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:15.025916Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:15.026625Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:15.026772Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:15.027194Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:15.027509Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.027922Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.028058Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.028133Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.028278Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.028349Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.028473Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.028687Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.029104Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.029167Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.029423Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.030163Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.030333Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.030582Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.032025Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.032769Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.033190Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:15.033483Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.033881Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034098Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034313Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034387Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034501Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034569Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034679Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034744Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034863Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.034928Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035039Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035114Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035399Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035839Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.035965Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036050Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036172Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036251Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036368Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036434Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036547Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036612Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036725Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.036787Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.037045Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.037396Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.037846Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.037911Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038052Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038174Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038292Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038363Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038542Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.038867Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.039300Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.039365Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.039477Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.039539Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.039653Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.039717Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.039831Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.039896Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.040004Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.040083Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.040213Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.040325Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.040688Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041190Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041305Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.041367Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.056604Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.057162Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.057241Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.057403Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.057473Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.057559Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.058724Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.059089Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.059628Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:15.059682Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:15.061727Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.062314Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.062731Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.063344Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.064879Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.065579Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:17:15.065936Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.066631Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.067492Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.068858Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.074237Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T22:17:15.077317Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:17:15.081493Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T22:17:15.082382Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T22:17:15.085595Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:17:15.135629Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.136415Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.139664Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-06-08T22:17:15.148762Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T22:17:15.153264Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.154017Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.159869Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T22:17:15.188478Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.189139Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.192319Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:17:15.955639Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.957042Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:17:15.961584Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T22:17:16.097502Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:17:16.122347Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.123208Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.127012Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:17:16.187881Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.188809Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.192168Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:17:16.654522Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.655346Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.658860Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:17:16.719816Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.720654Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.724418Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:17:16.785287Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.786247Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.789788Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-06-08T22:17:16.850735Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.851586Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:16.855414Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:17:17.016638Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.017505Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.020922Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T22:17:17.082076Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.082879Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.086460Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:17:17.147497Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.148362Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.151876Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T22:17:17.313566Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.314404Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.317920Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-06-08T22:17:17.378824Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.379653Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.383196Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T22:17:17.544667Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.545382Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.548396Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-06-08T22:17:17.609808Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.609929Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.610702Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.611050Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.614378Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-06-08T22:17:17.616642Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-06-08T22:17:17.676014Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.676126Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.676870Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.677422Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.681004Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-06-08T22:17:17.681893Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T22:17:17.742162Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.742998Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.746291Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T22:17:17.857973Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.858786Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.862143Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-06-08T22:17:17.923310Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.924215Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.927793Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-06-08T22:17:17.988816Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.989596Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:17.993396Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-06-08T22:17:18.054190Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.054950Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.058599Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-06-08T22:17:18.119556Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.120379Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.124232Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T22:17:18.184983Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.185861Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.189052Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-06-08T22:17:18.250636Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.251417Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.254790Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T22:17:18.466612Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.467386Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.470326Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-06-08T22:17:18.483470Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.484288Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.488563Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T22:17:18.516644Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.517382Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.520763Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T22:17:18.682506Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.684458Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:17:18.688269Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T22:17:20.204326Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.205009Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.209466Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-06-08T22:17:20.269965Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.270709Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.274259Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-06-08T22:17:20.335256Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.335996Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.339162Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-06-08T22:17:20.400617Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.400750Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.401396Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.401849Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.405873Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:17:20.406907Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T22:17:20.466839Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.467492Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.470736Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-06-08T22:17:20.531799Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.532580Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.536242Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:17:20.549232Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.549876Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.553141Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-06-08T22:17:20.614439Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.614537Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.615165Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.615638Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.619320Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-06-08T22:17:20.649014Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.649658Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.652760Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-06-08T22:17:20.655151Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-06-08T22:17:20.657686Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.657779Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.658272Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.658580Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.662641Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-06-08T22:17:20.663416Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:17:20.675104Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.675618Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.679008Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-06-08T22:17:20.691695Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.692249Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.695578Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T22:17:20.696098Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.696510Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.699400Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-06-08T22:17:20.712420Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.712980Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.716081Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-06-08T22:17:20.720745Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.721299Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.724324Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-06-08T22:17:20.737357Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.738064Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.741145Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T22:17:20.770099Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.770175Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.770645Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.773803Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T22:17:20.985566Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.986176Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:20.989875Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-06-08T22:17:21.050989Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.215514Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.216049Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.219533Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-06-08T22:17:21.280805Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.696065Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.696601Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:21.700093Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-06-08T22:17:21.761260Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.276502Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.277014Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.280279Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-06-08T22:17:22.341422Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.341514Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.341966Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.344738Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-06-08T22:17:22.406075Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.670932Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.671421Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:22.674517Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-06-08T22:17:22.735833Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.602346Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.602816Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.605741Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-06-08T22:17:23.635214Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.635505Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.635654Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.636111Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.636702Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.641189Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:23.642341Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:23.669372Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.669672Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.672294Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:23.679497Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:23.685423Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.685491Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.685689Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.688374Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:23.701542Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.717161Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.717404Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.720287Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:23.749467Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.618069Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:33.907856Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:33.907856Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] 
[2026-06-08T22:17:33.907856Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:33.907921Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] 
[2026-06-08T22:17:33.907928Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:33.907935Z] [nf-6965e8388c5c8fea46c9e9b0bf1a959c-4c637-5cg67] [580_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec