File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/18d6cb633706f9504fccf71db6ab16/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-axwitus6 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:24:20,198 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:24:21,021 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:24:21,188 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:24:22,102 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:24:22,176 - cnv_pipe.batch.run_model - INFO - Processing cluster 1846 with 190 probes
2026-06-08 22:24:22,639 - cnv_pipe.batch.run_model.cluster1846 - INFO - Child process started for cluster 1846 with 190 probes
2026-06-08 22:25:17,925 - cnv_pipe.batch.run_model.cluster1846 - INFO - Child process finished cluster 1846. Wrote cluster_1846_samples.csv and cluster_1846_params.csv
2026-06-08 22:25:17,926 - cnv_pipe.batch.run_model - INFO - Cluster 1846 finished in 55.75 seconds. Status: SUCCESS