Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/884929871d56affb46d8665e027b8e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/a69354f0e9a94bea30f181322832e5/positive_somatic_control_2.snv_indel.whatshap.chr5.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/884929871d56affb46d8665e027b8e/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/3953409238089bc730214d32b79297/positive_somatic_control_2.snv_indel.whatshap.chr21.phased.vcf.gz
==> STAGING COMPLETE (4 inputs)

Checking the headers and starting positions of 2 files
ls: positive_somatic_control_2.snv_indel.phased.vcf.gz.csi: No such file or directory