Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA
Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT
Read1 before filtering:
total reads: 62899
total bases: 9434850
Q20 bases: 9272103(98.275%)
Q30 bases: 8995714(95.3456%)
Q40 bases: 8995714(95.3456%)
Read2 before filtering:
total reads: 62899
total bases: 9434850
Q20 bases: 9217984(97.7014%)
Q30 bases: 8930666(94.6562%)
Q40 bases: 8930666(94.6562%)
Read1 after filtering:
total reads: 62896
total bases: 8903870
Q20 bases: 8799424(98.827%)
Q30 bases: 8562137(96.162%)
Q40 bases: 8562137(96.162%)
Read2 after filtering:
total reads: 62896
total bases: 8904361
Q20 bases: 8743682(98.1955%)
Q30 bases: 8508716(95.5567%)
Q40 bases: 8508716(95.5567%)
Filtering result:
reads passed filter: 125792
reads failed due to low quality: 6
reads failed due to too many N: 0
reads failed due to too short: 0
reads with adapter trimmed: 29407
bases trimmed due to adapters: 1060725
Duplication rate: 0.785386%
Insert size peak (evaluated by paired-end reads): 180
JSON report: Sig_18_tissue.fastp.json
HTML report: Sig_18_tissue.fastp.html
fastp --in1 Sig_18_tissue_S3_L003_R1_001.fastq.gz --in2 Sig_18_tissue_S3_L003_R2_001.fastq.gz --out1 Sig_18_tissue/Sig_18_tissue_R1.fastq.gz --out2 Sig_18_tissue/Sig_18_tissue_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json Sig_18_tissue.fastp.json --html Sig_18_tissue.fastp.html --thread 4
fastp v1.0.1, time used: 1 seconds