#!/bin/bash -Ceuo pipefail
echo "sequencing_library_id,secondary_sequencing_library_id,analysis,software,software_version,s3_path,s3_path_qc,s3_path_params,harmonized_s3_path" > results.csv
while IFS= read -r sample_id; do
    echo "${sample_id},,altera_inhouse_dna,daq,b6416cbd58d0d2df9675a98d3b72a337773b61a6,s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/daq_exclude_controls/daq-exclude-ctrl-20260608-220255/,s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/daq_exclude_controls/daq-exclude-ctrl-20260608-220255/reports/postdedup_qc.json,s3://natera-platform-sandbox/platform-users/rsrivas/pipeline_runs/somatic_cnv/daq_exclude_controls/daq-exclude-ctrl-20260608-220255/pipeline_info/params_2026-06-08_22-03-54.json," >> results.csv
done < sample_ids.txt

cat <<-END_VERSIONS > versions.yml
"DAQ:GENERATE_RESULTS_CSV":
    bash: $(bash --version | head -1 | awk '{print $4}')
END_VERSIONS