Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/fc8898f99e8b6ba4ee9bae4874ca7e/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/815fcba166d8ce4d079cb5f9fc9e6a/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/fed074c5ef2ce5273e428877ea48a0/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/fed074c5ef2ce5273e428877ea48a0/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/aefaebec2e0526fac052133cdbc073/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/f7cabd253a1acd74a55d3e70173ad3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/fc8898f99e8b6ba4ee9bae4874ca7e/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/fed074c5ef2ce5273e428877ea48a0/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/83d63ee43dab72fc07dabf2a4e8ce9/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/bc229ddd360b5814901539299f56ea/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/815fcba166d8ce4d079cb5f9fc9e6a/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_daq/e2e_regression_bcl/rundir/InterOp/TileMetricsOut.bin
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/83d63ee43dab72fc07dabf2a4e8ce9/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/a6cddcd6c977973443d7744a19ca98/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/a6cddcd6c977973443d7744a19ca98/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/815fcba166d8ce4d079cb5f9fc9e6a/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/a6cddcd6c977973443d7744a19ca98/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/aefaebec2e0526fac052133cdbc073/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/fc8898f99e8b6ba4ee9bae4874ca7e/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/9660a5d1f6339209f51542173b898c/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/9660a5d1f6339209f51542173b898c/output/Reports/Demultiplex_Stats.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/bc229ddd360b5814901539299f56ea/output/Reports/Index_Hopping_Counts.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/08/bc229ddd360b5814901539299f56ea/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/83d63ee43dab72fc07dabf2a4e8ce9/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/9660a5d1f6339209f51542173b898c/output/Reports/Quality_Metrics.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5b/f7cabd253a1acd74a55d3e70173ad3/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-inputs/test_daq/e2e_regression_bcl/rundir/RunInfo.xml
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/aefaebec2e0526fac052133cdbc073/output/Reports/Index_Hopping_Counts.csv
==> STAGING COMPLETE (28 inputs)

INFO: InterOp files not provided, InterOp metrics will be null
Wrote flowcell_qc.csv with 7/13 metrics populated