File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c3/49381bcdc60cc4499f9fc3258aaab1/.command.err
Size
3.6 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed Sig_18_Blood_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:159000001, elapsed 0.1s, est remaining 1.0s, peak mem 102MB, user 1.1s, sys 0.1s, output queue size 2
progress 10% @chr2:71000001, elapsed 0.1s, est remaining 0.9s, peak mem 102MB, user 2.6s, sys 0.1s, output queue size 2
progress 15% @chr2:233000001, elapsed 0.2s, est remaining 0.9s, peak mem 102MB, user 4.1s, sys 0.2s, output queue size 2
progress 20% @chr3:152000001, elapsed 0.2s, est remaining 0.8s, peak mem 102MB, user 5.6s, sys 0.3s, output queue size 1
progress 25% @chr4:114000001, elapsed 0.3s, est remaining 0.8s, peak mem 102MB, user 7.0s, sys 0.4s, output queue size 11
progress 30% @chr5:85000001, elapsed 0.3s, est remaining 0.7s, peak mem 102MB, user 8.5s, sys 0.4s, output queue size 3
progress 35% @chr6:58000001, elapsed 0.4s, est remaining 0.7s, peak mem 102MB, user 10.1s, sys 0.5s, output queue size 7
progress 40% @chr7:54000001, elapsed 0.4s, est remaining 0.6s, peak mem 102MB, user 11.5s, sys 0.5s, output queue size 1
progress 45% @chr8:57000001, elapsed 0.5s, est remaining 0.6s, peak mem 102MB, user 13.0s, sys 0.6s, output queue size 1
progress 50% @chr9:72000001, elapsed 0.5s, est remaining 0.5s, peak mem 102MB, user 14.5s, sys 0.6s, output queue size 2
progress 55% @chr10:94000001, elapsed 0.6s, est remaining 0.5s, peak mem 102MB, user 16.0s, sys 0.7s, output queue size 1
progress 60% @chr11:121000001, elapsed 0.6s, est remaining 0.4s, peak mem 102MB, user 17.5s, sys 0.8s, output queue size 3
progress 65% @chr13:11000001, elapsed 0.7s, est remaining 0.4s, peak mem 102MB, user 18.9s, sys 0.8s, output queue size 4
progress 70% @chr14:61000001, elapsed 0.7s, est remaining 0.3s, peak mem 102MB, user 20.4s, sys 0.9s, output queue size 1
progress 75% @chr16:6000001, elapsed 0.8s, est remaining 0.3s, peak mem 102MB, user 21.9s, sys 0.9s, output queue size 9
progress 80% @chr17:80000001, elapsed 0.8s, est remaining 0.2s, peak mem 102MB, user 23.3s, sys 1.0s, output queue size 4
progress 85% @chr20:21000001, elapsed 0.8s, est remaining 0.1s, peak mem 102MB, user 24.7s, sys 1.1s, output queue size 1
progress 90% @chrX:35000001, elapsed 0.9s, est remaining 0.1s, peak mem 138MB, user 25.8s, sys 1.2s, output queue size 114
progress 95% @chrY:25000001, elapsed 1.0s, est remaining 0.1s, peak mem 147MB, user 27.2s, sys 1.3s, output queue size 271
progress 100% @chr21:41000001, elapsed 1.3s, est remaining 0.0s, peak mem 150MB, user 29.2s, sys 1.4s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 52290599
reads: 1001133
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1.157 user 0.774 sys 1.899 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.002 user 0.001 sys 1.356 real
idle: 80 calls 0.014 user 0.000 sys 41.276 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 157442048 mem 29.865 user 1.515 sys 2.506 real