#!/bin/bash -Ceuo pipefail
awk -F'\t' '
    NR == 2 {
        printf "min_msi_score\t%s\n",  $3
        printf "max_msi_score\t%s\n",  $4
        printf "mean_msi_score\t%s\n", $5
        printf "lci\t%s\n",            $6
        printf "uci\t%s\n",            $7
        printf "msi_status\t%s\n",     $8
    }
    END {
        if (NR < 2) {
            printf "min_msi_score\tNA\n"
            printf "max_msi_score\tNA\n"
            printf "mean_msi_score\tNA\n"
            printf "lci\tNA\n"
            printf "uci\tNA\n"
            printf "msi_status\tNA\n"
        }
    }
' negative_somatic_control_1_results.txt > negative_somatic_control_1.mimsi.tsv

cat <<-END_VERSIONS > versions.yml
"DAQ:CONTROL_METRICS:NEGATIVE_SOMATIC_METRICS:MIMSI":
    gawk: $(awk -W version 2>&1 | head -n1 | awk '{print $3}')
END_VERSIONS