File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/f56d7e895bb007967709f30a0bc5ed/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-21kx14oq because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-06-08 22:23:36,560 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-06-08 22:23:37,363 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-06-08 22:23:37,533 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-06-08 22:23:38,552 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-06-08 22:23:38,729 - cnv_pipe.batch.run_model - INFO - Processing cluster 1485 with 199 probes
2026-06-08 22:23:39,110 - cnv_pipe.batch.run_model.cluster1485 - INFO - Child process started for cluster 1485 with 199 probes
2026-06-08 22:24:37,330 - cnv_pipe.batch.run_model.cluster1485 - INFO - Child process finished cluster 1485. Wrote cluster_1485_samples.csv and cluster_1485_params.csv
2026-06-08 22:24:37,331 - cnv_pipe.batch.run_model - INFO - Cluster 1485 finished in 58.60 seconds. Status: SUCCESS