Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/955514a07abb61342144c2620bee7a/negative_somatic_control_1.snv_indel.whatshap.chr21.phased.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/b8b080ff5d2d27f2627c75809c1596/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/b8b080ff5d2d27f2627c75809c1596/.command.run
==> STAGING COMPLETE (3 inputs)

Checking the headers and starting positions of 1 files
ls: negative_somatic_control_1.snv_indel.phased.vcf.gz.csi: No such file or directory