cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_tumor.md.bam --read_filter QualCalFilter,table=HCC1395_tumor.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_tumor.table.post --algo ReadWriter HCC1395_tumor.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.2s, est remaining 3.2s, peak mem 262MB, user 0.3s, sys 4.2s, output queue size 30
progress 10% @chr2:75000001, elapsed 0.3s, est remaining 2.8s, peak mem 415MB, user 0.6s, sys 8.2s, output queue size 9
progress 15% @chr2:234000001, elapsed 0.4s, est remaining 2.5s, peak mem 562MB, user 0.9s, sys 12.1s, output queue size 36
progress 20% @chr3:152000001, elapsed 0.6s, est remaining 2.3s, peak mem 655MB, user 1.2s, sys 16.1s, output queue size 2
progress 25% @chr4:113000001, elapsed 0.7s, est remaining 2.2s, peak mem 772MB, user 1.5s, sys 20.2s, output queue size 9
progress 30% @chr5:85000001, elapsed 0.9s, est remaining 2.0s, peak mem 820MB, user 1.8s, sys 24.2s, output queue size 1
progress 35% @chr6:65000001, elapsed 1.0s, est remaining 1.8s, peak mem 865MB, user 2.0s, sys 28.1s, output queue size 7
progress 40% @chr7:57000001, elapsed 1.1s, est remaining 1.7s, peak mem 889MB, user 2.2s, sys 31.9s, output queue size 16
progress 45% @chr8:59000001, elapsed 1.3s, est remaining 1.5s, peak mem 1027MB, user 2.5s, sys 35.9s, output queue size 11
progress 50% @chr9:73000001, elapsed 1.4s, est remaining 1.4s, peak mem 1138MB, user 2.7s, sys 39.9s, output queue size 3
progress 55% @chr10:97000001, elapsed 1.5s, est remaining 1.3s, peak mem 1195MB, user 2.9s, sys 43.8s, output queue size 19
progress 60% @chr11:125000001, elapsed 1.7s, est remaining 1.1s, peak mem 1273MB, user 3.1s, sys 47.5s, output queue size 44
progress 65% @chr13:14000001, elapsed 1.8s, est remaining 1.0s, peak mem 1303MB, user 3.3s, sys 51.4s, output queue size 2
progress 70% @chr14:60000001, elapsed 1.9s, est remaining 0.8s, peak mem 1360MB, user 3.6s, sys 55.3s, output queue size 1
progress 75% @chr16:16000001, elapsed 2.1s, est remaining 0.7s, peak mem 1405MB, user 3.9s, sys 59.2s, output queue size 13
progress 80% @chr18:1000001, elapsed 2.2s, est remaining 0.5s, peak mem 1441MB, user 4.1s, sys 63.1s, output queue size 4
progress 85% @chr20:22000001, elapsed 2.3s, est remaining 0.4s, peak mem 1552MB, user 4.3s, sys 67.0s, output queue size 1
progress 90% @chrX:45000001, elapsed 2.7s, est remaining 0.3s, peak mem 2770MB, user 7.3s, sys 68.8s, output queue size 114
progress 95% @chrY:32000001, elapsed 2.9s, est remaining 0.2s, peak mem 2803MB, user 10.2s, sys 70.4s, output queue size 276
progress 100% @chr21:41000001, elapsed 5.6s, est remaining 0.0s, peak mem 2824MB, user 24.6s, sys 72.9s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50813899
output file size: 81484545
reads: 1001320
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.013 real
ReadQualCal::delayed_init: 1 calls 0.001 user 0.000 sys 0.020 real
ReadQualCal::init: 1 calls 0.010 user 0.000 sys 0.006 real
advance: 3219322 calls 1.547 user 8.739 sys 10.895 real
done: 1 calls 0.294 user 0.279 sys 0.575 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.008 user 0.000 sys 5.622 real
fetch: 3219322 calls 0.274 user 8.607 sys 9.110 real
fetch_reads: 3219322 calls 0.213 user 8.876 sys 9.178 real
fetch_ref: 11263 calls 0.043 user 0.020 sys 0.047 real
fetch_vcf: 11263 calls 1.112 user 0.040 sys 1.285 real
idle: 2321 calls 1.391 user 0.404 sys 108.804 real
init: 1 calls 0.001 user 0.000 sys 0.027 real
update: 11451 calls 6.566 user 1.228 sys 8.529 real
write: 3219322 calls 10.650 user 9.281 sys 19.789 real
overall: 2961743872 mem 29.542 user 74.032 sys 7.215 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before HCC1395_tumor.table --after HCC1395_tumor.table.post HCC1395_tumor.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 384
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.029 user 0.001 sys 0.023 real
done: 1 calls 0.048 user 0.002 sys 0.052 real
idle: 61 calls 0.002 user 0.000 sys 31.253 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 81928192 mem 0.080 user 0.023 sys 1.049 real