File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/da68d50c834af5dc5a0c657f919527/.command.log
Size
1.6 KB
Task
DAQ:SAMTOOLS_MERGE (Sig_18_tissue)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/da68d50c834af5dc5a0c657f919527/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/d8399ea5899177ed19852bf07270be/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/5e818d20cebeb97a723bd54bfa1c32/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/0d322fda23a4715a297c29d3b6aae7/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/8a1b2382c7cc4b419542090672f77a/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/d87d97c655c2e497ae50937781dade/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/da68d50c834af5dc5a0c657f919527/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/8f037ec866168877f6447baf038de6/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/42/be408dc3f734ddd55ab24e111a622b/Sig_18_tissue.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/ec3424e479d8b10cc9d3f84c1a5500/Sig_18_tissue.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory