Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/1e048d94bbc98f44884bc9c94b54e4/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/0dc76c699bd59c420b985816715eb4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/1e048d94bbc98f44884bc9c94b54e4/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/0dc76c699bd59c420b985816715eb4/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXW6ua5s/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXW6ua5s/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXW6ua5s/chr19_15162349-15162662.bed.gz.tbi
[2026-06-08T22:17:23.620588Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-08T22:17:23.622039Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-08T22:17:23.622067Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-08T22:17:23.622074Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-08T22:17:23.622080Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXW6ua5s'
[2026-06-08T22:17:23.622087Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-08T22:17:23.622093Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-08T22:17:23.622098Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-08T22:17:23.622102Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] [RunParameters] memMb: 3096076
[2026-06-08T22:17:23.622107Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-08T22:17:23.622112Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-08T22:17:23.622116Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-08T22:17:23.622121Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-08T22:17:23.622125Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-08T22:17:23.623199Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-08T22:17:23.623266Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-08T22:17:23.629683Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-08T22:17:23.630433Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-08T22:17:23.630659Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-08T22:17:23.630804Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-08T22:17:23.630999Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.631541Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.632025Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.632095Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.632310Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.632714Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.633122Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.633867Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.636004Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.636355Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-08T22:17:23.636731Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.636827Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.636954Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.637020Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.637134Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.637199Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.637312Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.637381Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.637492Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.637637Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.638094Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.638273Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.638610Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.638675Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.638783Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.638843Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.638956Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.639023Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.639171Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.639238Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.639345Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.639409Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.639533Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.639710Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.639911Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.640363Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.640839Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.640930Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.641096Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.641183Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.641321Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.641391Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.641548Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.641614Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.642452Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.643143Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.643336Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.643478Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.643615Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.643687Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.643805Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.643941Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.644753Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.644871Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.645015Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.645089Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.645215Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.645284Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.645414Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.645650Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.646150Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.646215Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.646333Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.646399Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.646510Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.646587Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.661116Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.661222Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.661297Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.661450Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.661519Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.661603Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.661669Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.661774Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.663040Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-08T22:17:23.663623Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-08T22:17:23.666000Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.666544Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.666887Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.667344Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.667728Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.668702Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.669270Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.671463Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.674035Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:17:23.677522Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:17:23.678101Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.681318Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:17:23.685139Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:17:23.689268Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:17:23.692256Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:17:23.694004Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:17:23.695447Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:17:23.796855Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.796966Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.797743Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.798284Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:23.803200Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:17:23.804376Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:17:24.166021Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.166888Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.170045Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:17:24.582570Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.583446Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.586899Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-06-08T22:17:24.648195Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.649089Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:24.652466Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:17:25.164879Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.165968Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.169763Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:17:25.230908Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.232225Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.232791Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.234189Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.237796Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:17:25.239606Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:17:25.268637Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.269589Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.273148Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:17:25.534826Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.535626Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:25.539640Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:17:26.152158Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.152974Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.156694Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-08T22:17:26.217830Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.218839Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.221867Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-06-08T22:17:26.283008Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.283083Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.283929Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.284573Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.289267Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:17:26.290816Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-08T22:17:26.317846Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.318947Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.321838Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-06-08T22:17:26.326854Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.327749Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.331178Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-06-08T22:17:26.359801Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.360705Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.363795Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:17:26.368651Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.369449Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.372357Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-06-08T22:17:26.434049Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.435027Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.438553Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:17:26.700341Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.701130Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.704474Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:17:26.705239Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.705829Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.709199Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-06-08T22:17:26.770322Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.771073Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:26.774756Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:17:27.086759Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.087553Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.090706Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-06-08T22:17:27.152153Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.152948Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.156767Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-06-08T22:17:27.218975Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.219102Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.219759Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.220367Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.224211Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-06-08T22:17:27.225552Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-06-08T22:17:27.285685Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.285796Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.286442Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.287222Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.291170Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:17:27.453712Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.454477Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.457596Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-06-08T22:17:27.520131Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.520245Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.520874Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.521626Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.525227Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-06-08T22:17:27.526944Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-06-08T22:17:27.586332Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.586441Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.587066Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.587417Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.591220Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:17:27.592671Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:17:27.651996Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.652673Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.656412Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-06-08T22:17:27.717613Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.718406Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.721609Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-08T22:17:27.783246Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.783905Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.788322Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:17:27.792444Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.793182Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:27.796807Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:17:28.158387Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.158994Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.162807Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:17:28.317657Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-06-08T22:17:28.324177Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.324270Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.324307Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.324885Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.325566Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.327893Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.328611Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-06-08T22:17:28.331726Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-06-08T22:17:28.333126Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:17:28.362574Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.363194Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.367208Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:17:28.367858Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.368420Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.371953Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-08T22:17:28.433273Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.433369Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.433926Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.434512Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.438664Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-06-08T22:17:28.439510Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:17:28.499672Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.500290Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.503160Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-06-08T22:17:28.564649Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.565240Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.568269Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:17:28.679710Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.680274Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.683418Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-06-08T22:17:28.744827Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.745443Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:17:28.748834Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:17:29.561672Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.561802Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.562288Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.562970Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.566948Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-06-08T22:17:29.568549Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-06-08T22:17:29.628274Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.628354Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.636211Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.636686Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.640348Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-06-08T22:17:29.701364Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.701475Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.701956Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-06-08T22:17:29.704892Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-06-08T22:17:29.767677Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.132624Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.133136Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.136092Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-06-08T22:17:30.197564Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.612635Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.613171Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-06-08T22:17:30.616525Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-06-08T22:17:30.678166Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.243581Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.244089Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.247740Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-06-08T22:17:31.309037Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.523398Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.523893Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.526747Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-08T22:17:31.588248Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.588503Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.588639Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.589225Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.590056Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.592739Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-08T22:17:31.594602Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-08T22:17:31.595224Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-08T22:17:31.624606Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.624679Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.624700Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.624886Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.625568Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.629360Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-08T22:17:31.630191Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-08T22:17:31.659439Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.659521Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.659727Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-08T22:17:31.662297Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-08T22:17:31.692676Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-08T22:17:34.211546Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-08T22:17:42.511138Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-08T22:17:42.511138Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] 
[2026-06-08T22:17:42.511138Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-08T22:17:42.511204Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] 
[2026-06-08T22:17:42.511212Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-08T22:17:42.511219Z] [nf-ce0dc76c699bd59c420b985816715eb4-2058d-kwt2n] [616_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec