Error executing process > 'FASTDUP (dna_s1343)'

Caused by:
  Process `FASTDUP (dna_s1343)` terminated with an error exit status (139)


Command executed:

  fastdup \
      --input dna_s1343.bam \
      --output dna_s1343.md.bam \
      --metrics dna_s1343.md.metrics \
      --num-threads 8 \
  
  
  samtools index -@ 8 dna_s1343.md.bam
  
  cat <<-END_VERSIONS > versions.yml
  "FASTDUP":
      fastdup: $(fastdup --version 2>&1 | head -1 | sed 's/fastdup //')
      samtools: $(samtools --version | head -1 | sed 's/samtools //')
  END_VERSIONS

Command exit status:
  139

Command output:
  (empty)

Command error:
  [2026-01-17 08:21:58.849] [fastdup] [info] fast markduplicates start
  .command.sh: line 7:   269 Segmentation fault      (core dumped) fastdup --input dna_s1343.bam --output dna_s1343.md.bam --metrics dna_s1343.md.metrics --num-threads 8

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/ccce2a7505ef7e072bca657b52eacb

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/fastdup:1.0.0

Tip: when you have fixed the problem you can continue the execution adding the option `-resume` to the run command line