Error executing process > 'FASTDUP (dna_s1343)'

Caused by:
  Process `FASTDUP (dna_s1343)` terminated with an error exit status (139)


Command executed:

  fastdup \
      --input dna_s1343.bam \
      --output dna_s1343.md.bam \
      --metrics dna_s1343.md.metrics \
      --num-threads 4 \
  
  
  samtools index -@ 4 dna_s1343.md.bam
  
  cat <<-END_VERSIONS > versions.yml
  "FASTDUP":
      fastdup: $(fastdup --version 2>&1 | head -1 | sed 's/fastdup //')
      samtools: $(samtools --version | head -1 | sed 's/samtools //')
  END_VERSIONS

Command exit status:
  139

Command output:
  (empty)

Command error:
  [2026-01-17 08:32:04.149] [fastdup] [info] fast markduplicates start
  .command.sh: line 7:   236 Segmentation fault      (core dumped) fastdup --input dna_s1343.bam --output dna_s1343.md.bam --metrics dna_s1343.md.metrics --num-threads 4

Work dir:
  s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/d2d93af310a6a2fa29ec77269a96f9

Container:
  292967571998.dkr.ecr.us-west-2.amazonaws.com/daq/fastdup:1.0.0

Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`