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2f3ff974-e2af-49e2-e063-0100007f46df_full_basic_stats.tsv
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s3://natera-platform-sandbox/users/abshah/daq/pipe9709/20250327_LH00362_0072_A22JH7CLT4/outputs/qc/2f3ff974-e2af-49e2-e063-0100007f46df_full_basic_stats.tsv
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daq-pipe9709-1
Published
Jan 09, 2026 6:56 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
2f3ff974-e2af-49e2-e063-0100007f46df 783904 104412 0.133195 783904 0.0 337888 1.5e-05 0.86679 0.000432 0.999568 72 280 345 11561 0.034215 5 11556 12 679480 243.285096 135.117416 0 0.857846 0.661794 0.661794 101923800 altera_v2_targets_effective_coding_hg38.bed 92 0.157538 0.0 0.0 0.0 0.0 0.682664 1.992538 2.304412 1.73661 1.127001 0.741291 0.455925 0.599473 0.428487 0.525646 0.953446 0.293346 0.214824 0.787689 0.0 0.297571 0.0 5.7e-05 2.023395 1.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0 0 0.0 0.0 1632930 0.5 0 0.0 0.0 1632931
2f3ff974-e2af-49e2-e063-0100007f46df 783904 104412 0.133195 783904 0.0 337888 3.1e-05 0.866774 0.001297 0.998703 72 280 345 11561 0.034215 15 11546 24 679468 243.285096 135.117416 0 0.857846 0.661794 0.661794 101923800 altera_v2_targets_effective_noncoding_hg38.bed 92 1.427867 0.0 0.0 0.0 0.813884 1.173752 1.637734 1.085936 0.594033 0.846691 1.158591 0.80293 0.573791 1.360212 1.092093 0.840461 1.313352 0.187408 0.0 0.0 0.0 0.0 0.000394 2.062017 7.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0 0 0.0 0.0 3305132 0.5 0 0.0 0.0 3307258
2f3ff974-e2af-49e2-e063-0100007f46df 783904 104412 0.133195 783904 0.0 337888 0.000446 0.866359 0.015224 0.984776 72 280 345 11561 0.034215 176 11385 350 679142 243.285096 135.117416 0 0.857846 0.661794 0.661794 101923800 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed 92 0.204385 0.0 2.401529 0.0 1.08154 1.247834 1.549683 1.588613 1.488139 1.265991 0.995905 0.739273 0.630391 0.501263 0.5133 0.707463 0.625292 0.052529 0.56206 0.0 1.348229 0.0 0.000309 1.348332 5.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0 0 0.0 0.0 32326490 0.5 0 0.0 0.0 32521855
2f3ff974-e2af-49e2-e063-0100007f46df 783904 104412 0.133195 783904 0.0 337888 1.5e-05 0.86679 0.000432 0.999568 72 280 345 11561 0.034215 5 11556 12 679480 243.285096 135.117416 0 0.857846 0.661794 0.661794 101923800 altera_v2_targets_coding_hg38.bed 92 0.157073 0.0 0.0 0.0 0.0 0.68065 1.970893 2.300896 1.733541 1.121485 0.755631 0.454238 0.598605 0.426176 0.525831 0.976097 0.302927 0.196341 1.178048 0.0 0.286097 0.0 5.7e-05 2.024233 1.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0 0 0.0 0.0 1634351 0.5 0 0.0 0.0 1634355
2f3ff974-e2af-49e2-e063-0100007f46df 783904 104412 0.133195 783904 0.0 337888 3.3e-05 0.866772 0.001384 0.998616 72 280 345 11561 0.034215 16 11545 26 679466 243.285096 135.117416 0 0.857846 0.661794 0.661794 101923800 altera_v2_targets_noncoding_hg38.bed 92 1.438669 0.0 0.0 0.0 0.932596 0.970022 1.35692 1.179415 0.834776 0.869333 1.148684 0.618725 0.668101 1.454024 0.960086 1.104508 1.367747 0.191822 0.0 0.0 0.120278 0.0 0.000368 2.157118 7.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0 0 0.0 0.0 3864954 0.5 0 0.0 0.0 3868304
2f3ff974-e2af-49e2-e063-0100007f46df 783904 104412 0.133195 783904 0.0 337888 3.1e-05 0.866774 0.001297 0.998703 72 280 345 11561 0.034215 15 11546 24 679468 243.285096 135.117416 0 0.857846 0.661794 0.661794 101923800 altera_v2_probes_noncoding_postQC_hg38.bed 92 0.0 0.0 0.0 0.996562 0.72808 0.873425 1.038422 0.990347 0.766898 1.014525 0.986353 1.483637 1.165831 1.042884 0.829403 1.201544 0.955241 1.088975 1.671065 0.0 0.0 0.0 0.000381 2.084444 7.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0 0 0.0 0.0 3420162 0.5 0 0.0 0.0 3425160
2f3ff974-e2af-49e2-e063-0100007f46df 783904 104412 0.133195 783904 0.0 337888 1.5e-05 0.86679 0.000432 0.999568 72 280 345 11561 0.034215 5 11556 12 679480 243.285096 135.117416 0 0.857846 0.661794 0.661794 101923800 altera_v2_probes_coding_postQC_hg38.bed 92 0.0 0.0 0.0 0.0 1.44052 1.934571 1.98116 1.618864 1.305663 0.86085 0.786242 0.65092 0.832672 0.718821 0.635102 0.471975 0.366523 0.480173 0.400144 0.0 0.0 0.0 4.2e-05 2.047624 1.0 0.0 0.0 0.0 0.0 0.0 1.0 1.0 0 0 0.0 0.0 2284498 0.5 0 0.0 0.0 2300280
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