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0195c49a-b486-71b4-b36b-6384bb7852f1_full_basic_stats.tsv
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s3://natera-platform-sandbox/users/abshah/daq/pipe9709/20250327_LH00362_0072_A22JH7CLT4/outputs/qc/0195c49a-b486-71b4-b36b-6384bb7852f1_full_basic_stats.tsv
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daq-pipe9709-1
Published
Jan 09, 2026 7:15 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
0195c49a-b486-71b4-b36b-6384bb7852f1 463968376 484592 0.001044 463968376 0.0 231564220 0.00098 0.997976 0.001552 0.998448 248 340 469 226782177 0.979349 351958 226430219 454672 463029112 362.429504 109.417488 0 0.975125 0.934119 0.934119 69522567600 altera_v2_targets_effective_coding_hg38.bed 985637 0.423524 0.0 0.0 0.492655 0.64363 0.565935 1.198391 1.143279 1.08232 1.001541 1.042131 0.997541 0.923994 0.768908 0.808813 1.238312 1.646531 1.370477 4.198163 0.0 0.790308 0.0 17.482067 0.218388 99.0 7.0 10.0 17.0 26.0 30.0 1.0 1.0 17496 0 0.010714 0.0 1632930 0.0 6710 -175.3237 -0.05 1632931
0195c49a-b486-71b4-b36b-6384bb7852f1 463968376 484592 0.001044 463968376 0.0 231564220 0.001351 0.997605 0.001722 0.998278 248 340 469 226782177 0.979349 390426 226391751 626759 462857025 362.429504 109.417488 0 0.975125 0.934119 0.934119 69522567600 altera_v2_targets_effective_noncoding_hg38.bed 985637 0.611279 0.0 0.0 1.156704 0.711279 0.940765 1.04282 0.98476 1.05548 1.080464 1.204115 0.959862 0.740923 0.969106 0.984687 0.831507 0.658733 0.904194 0.057307 0.0 0.314714 0.0 17.28325 0.220613 56.0 7.0 10.0 17.0 25.0 29.0 1.0 1.0 30729 0 0.009297 0.0 3305132 0.0 6710 -175.3237 -0.05 3307258
0195c49a-b486-71b4-b36b-6384bb7852f1 463968376 484592 0.001044 463968376 0.0 231564220 0.020042 0.978914 0.032258 0.967742 248 340 469 226782177 0.979349 7315454 219466723 9298653 454185131 362.429504 109.417488 0 0.975125 0.934119 0.934119 69522567600 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed 985637 0.17629 0.0 0.945054 0.815454 1.097635 1.07621 1.2028 1.198398 1.203516 1.161718 1.026589 0.96972 0.846335 0.690644 0.65556 0.645775 0.692345 0.632706 2.892756 0.0 1.053167 0.0 17.541365 0.211407 837.0 6.0 10.0 17.0 26.0 30.0 0.999727 0.999999 431694 8817 0.013354 0.000273 32326490 0.0 6710 -175.3237 -0.05 32521855
0195c49a-b486-71b4-b36b-6384bb7852f1 463968376 484592 0.001044 463968376 0.0 231564220 0.00098 0.997975 0.001552 0.998448 248 340 469 226782177 0.979349 352072 226430105 454843 463028941 362.429504 109.417488 0 0.975125 0.934119 0.934119 69522567600 altera_v2_targets_coding_hg38.bed 985637 0.423232 0.0 0.0 0.492315 0.643186 0.565545 1.189838 1.143803 1.082434 1.000045 1.04543 0.995851 0.924053 0.767845 0.810706 1.257361 1.675744 1.297754 6.041186 0.0 0.767626 0.0 17.480344 0.218523 99.0 7.0 10.0 17.0 26.0 30.0 1.0 1.0 17498 0 0.010706 0.0 1634351 0.0 6710 -175.3237 -0.05 1634355
0195c49a-b486-71b4-b36b-6384bb7852f1 463968376 484592 0.001044 463968376 0.0 231564220 0.001543 0.997413 0.001954 0.998046 248 340 469 226782177 0.979349 443194 226338983 715824 462767960 362.429504 109.417488 0 0.975125 0.934119 0.934119 69522567600 altera_v2_targets_noncoding_hg38.bed 985637 0.62696 0.0 0.0 0.88449 0.77265 0.945448 1.076949 1.0414 1.130177 1.133807 1.113176 0.84825 0.793834 0.840818 0.988563 0.909751 0.653572 0.885721 0.067638 0.0 0.338208 0.0 17.192182 0.221364 56.0 6.0 10.0 17.0 25.0 29.0 1.0 1.0 34034 0 0.008806 0.0 3864954 0.0 6710 -175.3237 -0.05 3868304
0195c49a-b486-71b4-b36b-6384bb7852f1 463968376 484592 0.001044 463968376 0.0 231564220 0.001385 0.99757 0.001755 0.998245 248 340 469 226782177 0.979349 398043 226384134 642814 462840970 362.429504 109.417488 0 0.975125 0.934119 0.934119 69522567600 altera_v2_probes_noncoding_postQC_hg38.bed 985637 0.0 0.0 0.0 1.130363 1.036967 0.995542 1.026837 1.039528 0.93175 0.964471 0.950726 1.02519 1.09811 0.924978 0.946284 1.379501 1.054699 1.103771 1.491677 0.0 0.0 0.0 17.25311 0.221692 56.0 7.0 10.0 17.0 25.0 29.0 1.0 1.0 31392 0 0.009179 0.0 3420162 0.0 6710 -175.3237 -0.05 3425160
0195c49a-b486-71b4-b36b-6384bb7852f1 463968376 484592 0.001044 463968376 0.0 231564220 0.001173 0.997783 0.001726 0.998273 248 340 469 226782177 0.979349 391532 226390645 544138 462939646 362.429504 109.417488 0 0.975125 0.934119 0.934119 69522567600 altera_v2_probes_coding_postQC_hg38.bed 985637 0.0 0.0 0.0 0.0 0.776583 1.226012 1.312348 1.267353 1.161178 0.967516 0.889371 0.87579 0.915066 0.83643 0.815549 0.931859 0.905024 0.472739 4.045798 0.0 0.0 0.0 17.444641 0.217907 99.0 7.0 10.0 17.0 26.0 30.0 1.0 1.0 23530 0 0.0103 0.0 2284498 0.0 6710 -175.3237 -0.05 2300280
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