File Info

Filename
0195c49d-472f-7e88-adff-3205d4839526_full_basic_stats.tsv
Full Path
s3://natera-platform-sandbox/users/abshah/daq/pipe9709/20250327_LH00362_0072_A22JH7CLT4/outputs/qc/0195c49d-472f-7e88-adff-3205d4839526_full_basic_stats.tsv
Size
4.9 KB
Workflow Run
daq-pipe9709-1
Published
Jan 09, 2026 7:31 PM

Content

View in new tab
name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
0195c49d-472f-7e88-adff-3205d4839526 852938082 913231 0.001071 852938082 0.0 425678070 0.000957 0.997973 0.001602 0.998398 269 374 532 414886140 0.974648 664813 414221327 815840 851209011 402.32744 126.065712 0 0.971796 0.926235 0.926235 127803727650 altera_v2_targets_effective_coding_hg38.bed 990508 0.345641 0.0 0.0 0.182794 0.465318 0.491002 1.220931 1.020454 0.968685 0.91249 1.034027 1.115238 0.990474 0.827251 0.916707 1.545646 2.416428 2.114089 7.298635 0.0 1.079124 0.0 31.197582 0.192825 160.0 10.0 17.0 31.0 43.0 49.0 0.999894 1.0 993677 173 0.608524 0.000106 1632930 0.0 7089 -517.658 -0.0641 1632931
0195c49d-472f-7e88-adff-3205d4839526 852938082 913231 0.001071 852938082 0.0 425678070 0.001328 0.997601 0.001745 0.998255 269 374 532 414886140 0.974648 724052 414162088 1132913 850891938 402.32744 126.065712 0 0.971796 0.926235 0.926235 127803727650 altera_v2_targets_effective_noncoding_hg38.bed 990508 0.507951 0.0 0.0 0.889026 0.557659 0.915954 0.974588 0.933489 1.083639 1.091793 1.354884 0.968648 0.685351 1.009989 1.004029 0.802726 0.523887 1.206437 0.033162 0.0 0.253812 0.0 31.165265 0.193276 87.0 10.0 18.0 31.0 43.0 49.0 1.0 1.0 1998584 0 0.604691 0.0 3305132 0.0 7089 -517.658 -0.0641 3307258
0195c49d-472f-7e88-adff-3205d4839526 852938082 913231 0.001071 852938082 0.0 425678070 0.019644 0.979286 0.033547 0.966453 269 374 532 414886140 0.974648 13918361 400967779 16754695 835270156 402.32744 126.065712 0 0.971796 0.926235 0.926235 127803727650 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed 990508 0.141966 0.0 0.780266 0.631307 1.062862 1.05522 1.155472 1.157721 1.177973 1.156744 1.014782 1.0077 0.872497 0.696356 0.667669 0.596794 0.715894 0.690051 4.693756 0.0 1.040975 0.0 31.328558 0.181324 957.0 11.0 18.0 31.0 44.0 50.0 0.999554 0.999996 19535782 14415 0.604327 0.000446 32326490 0.0 7089 -517.658 -0.0641 32521855
0195c49d-472f-7e88-adff-3205d4839526 852938082 913231 0.001071 852938082 0.0 425678070 0.000957 0.997972 0.001603 0.998397 269 374 532 414886140 0.974648 665019 414221121 816091 851208760 402.32744 126.065712 0 0.971796 0.926235 0.926235 127803727650 altera_v2_targets_coding_hg38.bed 990508 0.345376 0.0 0.0 0.182653 0.464961 0.490625 1.211819 1.020855 0.9686 0.911178 1.037067 1.113665 0.990654 0.825139 0.91884 1.579707 2.479188 1.971509 10.72904 0.0 1.04426 0.0 31.190232 0.192959 160.0 10.0 17.0 31.0 43.0 49.0 0.999894 1.0 993995 173 0.608189 0.000106 1634351 0.0 7089 -517.658 -0.0641 1634355
0195c49d-472f-7e88-adff-3205d4839526 852938082 913231 0.001071 852938082 0.0 425678070 0.001361 0.997568 0.001777 0.998223 269 374 532 414886140 0.974648 737412 414148728 1161238 850863613 402.32744 126.065712 0 0.971796 0.926235 0.926235 127803727650 altera_v2_probes_noncoding_postQC_hg38.bed 990508 0.0 0.0 0.0 1.103873 1.052054 0.945359 1.008685 1.053152 0.909535 0.958427 0.944495 0.998124 1.191893 0.902713 0.974944 1.61884 1.116267 1.394667 2.156962 0.0 0.0 0.0 31.099129 0.194654 87.0 10.0 18.0 31.0 43.0 49.0 1.0 1.0 2059427 0 0.602143 0.0 3420162 0.0 7089 -517.658 -0.0641 3425160
0195c49d-472f-7e88-adff-3205d4839526 852938082 913231 0.001071 852938082 0.0 425678070 0.001517 0.997412 0.001985 0.998015 269 374 532 414886140 0.974648 823438 414062702 1293978 850730873 402.32744 126.065712 0 0.971796 0.926235 0.926235 127803727650 altera_v2_targets_noncoding_hg38.bed 990508 0.520826 0.0 0.0 0.674255 0.599261 0.956378 1.039733 0.982982 1.148312 1.1495 1.218843 0.83459 0.789923 0.827957 0.998694 0.866029 0.527975 1.247358 0.045669 0.0 0.270912 0.0 30.988437 0.193975 87.0 10.0 18.0 31.0 43.0 48.0 1.0 1.0 2300448 0 0.595207 0.0 3864954 0.0 7089 -517.658 -0.0641 3868304
0195c49d-472f-7e88-adff-3205d4839526 852938082 913231 0.001071 852938082 0.0 425678070 0.001145 0.997784 0.001773 0.998227 269 374 532 414886140 0.974648 735386 414150754 976697 851048154 402.32744 126.065712 0 0.971796 0.926235 0.926235 127803727650 altera_v2_probes_coding_postQC_hg38.bed 990508 0.0 0.0 0.0 0.0 0.674894 1.233259 1.373156 1.332759 1.184004 0.913614 0.803721 0.81848 0.915576 0.872183 0.872459 1.0997 1.025488 0.410233 6.814261 0.0 0.0 0.0 31.111568 0.193711 160.0 10.0 17.0 31.0 43.0 49.0 0.999905 1.0 1379960 217 0.604054 9.5e-05 2284498 0.0 7089 -517.658 -0.0641 2300280
8 rows