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0195c49b-e453-7e55-a212-2d8ee5e5fc84_full_basic_stats.tsv
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s3://natera-platform-sandbox/users/abshah/daq/pipe9709/20250327_LH00362_0072_A22JH7CLT4/outputs/qc/0195c49b-e453-7e55-a212-2d8ee5e5fc84_full_basic_stats.tsv
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daq-pipe9709-1
Published
Jan 09, 2026 7:39 PM

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name reads unmapped frac_unmapped unique_reads frac_dupes pairs frac_reads_on_target frac_reads_off_target frac_pairs_on_target frac_pairs_off_target frag_size_q20 frag_size_median frag_size_q80 proper_pairs frac_proper_pairs pairs_on_target pairs_off_target reads_on_target reads_off_target frag_size_mean frag_size_std dupes n_q20 n_q25 n_q30 n_bases bed saturation_at_1000000_reads gc_0.0 gc_0.05 gc_0.1 gc_0.15 gc_0.2 gc_0.25 gc_0.3 gc_0.35 gc_0.4 gc_0.45 gc_0.5 gc_0.55 gc_0.6 gc_0.65 gc_0.7 gc_0.75 gc_0.8 gc_0.85 gc_0.9 gc_0.95 gc_1.0 min_depth mean_depth cv_depth max_depth q1_depth q5_depth q50_depth q95_depth q99_depth lt100x lt700x n_bases_gt30x n_bases_gt100x frac_bases_gt30x frac_bases_gt100x roi_size contam n_sites loglik lrt bed_base_count
0195c49b-e453-7e55-a212-2d8ee5e5fc84 1038166932 1073712 0.001034 1038166932 0.0 518154773 0.000968 0.997998 0.001489 0.998511 228 335 447 506123021 0.97678 753804 505369217 1004857 1036088363 347.713856 105.672783 0 0.975345 0.935799 0.935799 155563983000 altera_v2_targets_effective_coding_hg38.bed 992513 0.400578 0.0 0.0 0.230434 0.574443 0.617553 1.256553 1.208828 1.132468 1.018595 1.032192 0.953594 0.893695 0.741703 0.792936 1.198141 1.535771 1.137844 3.704445 0.0 0.736332 0.0 37.918913 0.175199 205.0 14.0 23.0 38.0 51.0 57.0 0.999823 1.0 1397619 289 0.855896 0.000177 1632930 0.0 6773 -980.0034 -0.0004 1632931
0195c49b-e453-7e55-a212-2d8ee5e5fc84 1038166932 1073712 0.001034 1038166932 0.0 518154773 0.001343 0.997623 0.001685 0.998315 228 335 447 506123021 0.97678 852584 505270437 1394069 1035699151 347.713856 105.672783 0 0.975345 0.935799 0.935799 155563983000 altera_v2_targets_effective_noncoding_hg38.bed 992513 0.675802 0.0 0.0 1.14452 0.746026 0.95628 1.079121 0.994209 1.036119 1.070406 1.174887 0.950831 0.73928 0.974178 0.98413 0.847561 0.709194 0.841349 0.036007 0.0 0.323299 0.0 37.653224 0.174535 88.0 14.0 22.0 38.0 51.0 57.0 1.0 1.0 2813069 0 0.851122 0.0 3305132 0.0 6773 -980.0034 -0.0004 3307258
0195c49b-e453-7e55-a212-2d8ee5e5fc84 1038166932 1073712 0.001034 1038166932 0.0 518154773 0.019917 0.979049 0.03112 0.96888 228 335 447 506123021 0.97678 15750439 490372582 20677038 1016416182 347.713856 105.672783 0 0.975345 0.935799 0.935799 155563983000 xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v2.bed 992513 0.180944 0.0 0.983271 0.806666 1.118288 1.103265 1.239541 1.225545 1.222135 1.167174 1.023937 0.954328 0.833119 0.681867 0.648348 0.657972 0.690134 0.58722 2.556813 0.0 1.044486 0.0 38.248116 0.165685 1475.0 14.0 23.0 38.0 52.0 59.0 0.998431 0.99997 27796240 50711 0.85986 0.001569 32326490 0.0 6773 -980.0034 -0.0004 32521855
0195c49b-e453-7e55-a212-2d8ee5e5fc84 1038166932 1073712 0.001034 1038166932 0.0 518154773 0.000968 0.997998 0.00149 0.99851 228 335 447 506123021 0.97678 754023 505368998 1005195 1036088025 347.713856 105.672783 0 0.975345 0.935799 0.935799 155563983000 altera_v2_targets_coding_hg38.bed 992513 0.400245 0.0 0.0 0.230242 0.573965 0.61704 1.24761 1.209176 1.132389 1.016922 1.035969 0.952197 0.893611 0.7399 0.794722 1.221239 1.558163 1.09026 5.266047 0.0 0.714364 0.0 37.913518 0.17531 205.0 14.0 23.0 38.0 51.0 57.0 0.999823 1.0 1398570 289 0.855734 0.000177 1634351 0.0 6773 -980.0034 -0.0004 1634355
0195c49b-e453-7e55-a212-2d8ee5e5fc84 1038166932 1073712 0.001034 1038166932 0.0 518154773 0.001537 0.997429 0.001916 0.998084 228 335 447 506123021 0.97678 969834 505153187 1595615 1035497605 347.713856 105.672783 0 0.975345 0.935799 0.935799 155563983000 altera_v2_targets_noncoding_hg38.bed 992513 0.689934 0.0 0.0 0.888067 0.804198 0.958838 1.087812 1.056641 1.113716 1.121953 1.096198 0.844274 0.783298 0.863436 0.987781 0.931688 0.712041 0.816978 0.057912 0.0 0.339732 0.0 37.556798 0.176489 98.0 14.0 22.0 38.0 51.0 57.0 1.0 1.0 3276212 0 0.847672 0.0 3864954 0.0 6773 -980.0034 -0.0004 3868304
0195c49b-e453-7e55-a212-2d8ee5e5fc84 1038166932 1073712 0.001034 1038166932 0.0 518154773 0.001377 0.997588 0.001718 0.998282 228 335 447 506123021 0.97678 869708 505253313 1429992 1035663228 347.713856 105.672783 0 0.975345 0.935799 0.935799 155563983000 altera_v2_probes_noncoding_postQC_hg38.bed 992513 0.0 0.0 0.0 1.143239 1.031599 1.002043 1.034054 1.036905 0.926765 0.962135 0.947035 1.041647 1.094636 0.932603 0.940877 1.355325 1.04881 1.068079 1.418438 0.0 0.0 0.0 37.600691 0.175558 88.0 14.0 22.0 38.0 51.0 57.0 1.0 1.0 2904931 0 0.849355 0.0 3420162 0.0 6773 -980.0034 -0.0004 3425160
0195c49b-e453-7e55-a212-2d8ee5e5fc84 1038166932 1073712 0.001034 1038166932 0.0 518154773 0.001158 0.997808 0.001663 0.998338 228 335 447 506123021 0.97678 841446 505281575 1201936 1035891284 347.713856 105.672783 0 0.975345 0.935799 0.935799 155563983000 altera_v2_probes_coding_postQC_hg38.bed 992513 0.0 0.0 0.0 0.0 0.85034 1.273104 1.347005 1.278721 1.165993 0.974562 0.891083 0.86102 0.897316 0.832444 0.808965 0.905607 0.898068 0.498463 3.592891 0.0 0.0 0.0 37.835153 0.176237 205.0 14.0 22.0 38.0 51.0 57.0 0.999842 1.0 1950213 361 0.853672 0.000158 2284498 0.0 6773 -980.0034 -0.0004 2300280
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